Mercurial > repos > iuc > homer_findmotifsgenome
comparison test-data/motif_test1/homerResults.html @ 0:ec974e69e0b5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
author | iuc |
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date | Sun, 08 Aug 2021 11:02:42 +0000 |
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1 <HTML><HEAD><TITLE>fake_phix_peaks_bed_motif/ - Homer de novo Motif Results</TITLE></HEAD> | |
2 <BODY> | |
3 <H1>Homer <i>de novo</i> Motif Results (fake_phix_peaks_bed_motif/)</H1> | |
4 <A HREF="knownResults.html">Known Motif Enrichment Results</A><BR/> | |
5 <A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/> | |
6 If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into | |
7 <A HREF="http://www.benoslab.pitt.edu/stamp/">STAMP</A><BR/> | |
8 More information on motif finding results: <A HREF="http://biowhat.ucsd.edu/homer/">HOMER</A> | |
9 | <A HREF="http://biowhat.ucsd.edu/homer/motif/index.html">Description of Results</A> | |
10 | <A HREF="http://biowhat.ucsd.edu/homer/motif/practicalTips.html">Tips</A> | |
11 <BR/> | |
12 Total target sequences = 1<BR/> | |
13 Total background sequences = 4009<BR/> | |
14 <FONT color="red">* - possible false positive</FONT><BR/> | |
15 <TABLE border="1" cellpading="0" cellspacing="0"> | |
16 <TR><TD>Rank</TD><TD>Motif</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>% of Targets</TD><TD>% of Background</TD> | |
17 <TD>STD(Bg STD)</TD> | |
18 <TD>Best Match/Details</TD><TD>Motif File</TD></TR> | |
19 <TR><TD>1 | |
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26 | |
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56 | |
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61 | |
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71 | |
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73 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,250,44)">C</text> | |
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76 | |
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81 | |
82 </g> | |
83 </svg> | |
84 </TD><TD>1e-1</TD><TD>-2.921e+00</TD><TD>100.00%</TD><TD>5.39%</TD><TD>0.0bp (71.4bp)</TD><TD>Oc/dmmpmm(Noyes_hd)/fly(0.654)<BR/><A target="_blank" HREF="homerResults/motif1.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif1.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif1.motif">motif file (matrix)</A></TD></TR> | |
85 <TR><TD>2 | |
86 <FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> | |
87 <g font-family="Arial" font-weight="bold" font-size="66.5"> | |
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90 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,39)">G</text> | |
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144 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,275,44)">G</text> | |
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147 | |
148 </g> | |
149 </svg> | |
150 </TD><TD>1e-1</TD><TD>-2.921e+00</TD><TD>100.00%</TD><TD>5.39%</TD><TD>0.0bp (83.1bp)</TD><TD>RFX1/RFX1_YPD/[](Harbison)/Yeast(0.645)<BR/><A target="_blank" HREF="homerResults/motif2.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif2.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif2.motif">motif file (matrix)</A></TD></TR> | |
151 <TR><TD>3 | |
152 <FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> | |
153 <g font-family="Arial" font-weight="bold" font-size="66.5"> | |
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156 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> | |
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158 | |
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163 | |
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216 </TD><TD>1e-1</TD><TD>-2.916e+00</TD><TD>100.00%</TD><TD>5.43%</TD><TD>0.0bp (65.4bp)</TD><TD>PH0015.1_Crx/Jaspar(0.629)<BR/><A target="_blank" HREF="homerResults/motif3.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif3.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif3.motif">motif file (matrix)</A></TD></TR> | |
217 <TR><TD>4 | |
218 <FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> | |
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274 | |
275 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,277,49)">A</text> | |
276 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,44)">C</text> | |
277 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text> | |
278 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,275,34)">G</text> | |
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280 </g> | |
281 </svg> | |
282 </TD><TD>1e-1</TD><TD>-2.912e+00</TD><TD>100.00%</TD><TD>5.44%</TD><TD>0.0bp (83.7bp)</TD><TD>RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap(0.661)<BR/><A target="_blank" HREF="homerResults/motif4.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif4.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif4.motif">motif file (matrix)</A></TD></TR> | |
283 <TR><TD>5 | |
284 <FONT color="red">*</FONT></TD><TD><svg width="255" height="50"> | |
285 <g font-family="Arial" font-weight="bold" font-size="66.5"> | |
286 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,49)">C</text> | |
287 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text> | |
288 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> | |
289 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,2,34)">A</text> | |
290 | |
291 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text> | |
292 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text> | |
293 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,39)">G</text> | |
294 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,26,34)">T</text> | |
295 | |
296 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text> | |
297 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,44)">G</text> | |
298 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,51,39)">T</text> | |
299 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,50,34)">C</text> | |
300 | |
301 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,49)">C</text> | |
302 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,75,44)">G</text> | |
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315 | |
316 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,49)">C</text> | |
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318 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text> | |
319 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,152,34)">A</text> | |
320 | |
321 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text> | |
322 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text> | |
323 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,39)">G</text> | |
324 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,176,34)">T</text> | |
325 | |
326 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text> | |
327 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text> | |
328 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text> | |
329 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,200,34)">G</text> | |
330 | |
331 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,49)">C</text> | |
332 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,44)">G</text> | |
333 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text> | |
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337 </svg> | |
338 </TD><TD>1e-1</TD><TD>-2.907e+00</TD><TD>100.00%</TD><TD>5.48%</TD><TD>0.0bp (75.6bp)</TD><TD>SNRNP70K(RRM)/Drosophila_melanogaster-RNCMPT00143-PBM/HughesRNA(0.785)<BR/><A target="_blank" HREF="homerResults/motif5.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif5.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif5.motif">motif file (matrix)</A></TD></TR> | |
339 <TR><TD>6 | |
340 <FONT color="red">*</FONT></TD><TD><svg width="255" height="50"> | |
341 <g font-family="Arial" font-weight="bold" font-size="66.5"> | |
342 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text> | |
343 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text> | |
344 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> | |
345 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text> | |
346 | |
347 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text> | |
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351 | |
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356 | |
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361 | |
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381 | |
382 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text> | |
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385 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,200,34)">C</text> | |
386 | |
387 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,49)">C</text> | |
388 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,44)">G</text> | |
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393 </svg> | |
394 </TD><TD>1e-1</TD><TD>-2.907e+00</TD><TD>100.00%</TD><TD>5.49%</TD><TD>0.0bp (83.3bp)</TD><TD>DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer(0.657)<BR/><A target="_blank" HREF="homerResults/motif6.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif6.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif6.motif">motif file (matrix)</A></TD></TR> | |
395 <TR><TD>7 | |
396 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50"> | |
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439 </svg> | |
440 </TD><TD>1e-1</TD><TD>-2.898e+00</TD><TD>100.00%</TD><TD>5.53%</TD><TD>0.0bp (70.2bp)</TD><TD>HNRNPA1L2(RRM)/Homo_sapiens-RNCMPT00023-PBM/HughesRNA(0.812)<BR/><A target="_blank" HREF="homerResults/motif7.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif7.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif7.motif">motif file (matrix)</A></TD></TR> | |
441 <TR><TD>8 | |
442 <FONT color="red">*</FONT></TD><TD><svg width="205" height="50"> | |
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446 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> | |
447 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text> | |
448 | |
449 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text> | |
450 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text> | |
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452 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text> | |
453 | |
454 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text> | |
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456 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,39)">G</text> | |
457 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,51,34)">T</text> | |
458 | |
459 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text> | |
460 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,44)">C</text> | |
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462 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,75,34)">G</text> | |
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464 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,49)">C</text> | |
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467 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,102,34)">A</text> | |
468 | |
469 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text> | |
470 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text> | |
471 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text> | |
472 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text> | |
473 | |
474 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text> | |
475 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text> | |
476 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text> | |
477 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,150,34)">G</text> | |
478 | |
479 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text> | |
480 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text> | |
481 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text> | |
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484 </g> | |
485 </svg> | |
486 </TD><TD>1e-1</TD><TD>-2.889e+00</TD><TD>100.00%</TD><TD>5.58%</TD><TD>0.0bp (78.0bp)</TD><TD>AGL42/MA1201.1/Jaspar(0.903)<BR/><A target="_blank" HREF="homerResults/motif8.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif8.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif8.motif">motif file (matrix)</A></TD></TR> | |
487 </TABLE> | |
488 <P></P> | |
489 </BODY></HTML> |