Mercurial > repos > iuc > homer_findmotifsgenome
diff test-data/motif_test1/homerResults.html @ 0:ec974e69e0b5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
| author | iuc |
|---|---|
| date | Sun, 08 Aug 2021 11:02:42 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/motif_test1/homerResults.html Sun Aug 08 11:02:42 2021 +0000 @@ -0,0 +1,489 @@ +<HTML><HEAD><TITLE>fake_phix_peaks_bed_motif/ - Homer de novo Motif Results</TITLE></HEAD> +<BODY> +<H1>Homer <i>de novo</i> Motif Results (fake_phix_peaks_bed_motif/)</H1> +<A HREF="knownResults.html">Known Motif Enrichment Results</A><BR/> +<A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/> +If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into +<A HREF="http://www.benoslab.pitt.edu/stamp/">STAMP</A><BR/> +More information on motif finding results: <A HREF="http://biowhat.ucsd.edu/homer/">HOMER</A> + | <A HREF="http://biowhat.ucsd.edu/homer/motif/index.html">Description of Results</A> + | <A HREF="http://biowhat.ucsd.edu/homer/motif/practicalTips.html">Tips</A> +<BR/> +Total target sequences = 1<BR/> +Total background sequences = 4009<BR/> +<FONT color="red">* - possible false positive</FONT><BR/> +<TABLE border="1" cellpading="0" cellspacing="0"> +<TR><TD>Rank</TD><TD>Motif</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>% of Targets</TD><TD>% of Background</TD> +<TD>STD(Bg STD)</TD> +<TD>Best Match/Details</TD><TD>Motif File</TD></TR> +<TR><TD>1 +<FONT color="red">*</FONT></TD><TD><svg width="305" height="50"> + <g font-family="Arial" font-weight="bold" font-size="66.5"> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,49)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text> + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,2,34)">A</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,39)">G</text> + 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transform="matrix(0.55,0,0,0.100,125,39)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,150,34)">G</text> + + <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text> + <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text> + <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text> + <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,175,34)">C</text> + + </g> +</svg> +</TD><TD>1e-1</TD><TD>-2.889e+00</TD><TD>100.00%</TD><TD>5.58%</TD><TD>0.0bp (78.0bp)</TD><TD>AGL42/MA1201.1/Jaspar(0.903)<BR/><A target="_blank" HREF="homerResults/motif8.info.html">More Information</A> | <A target="blank" HREF="homerResults/motif8.similar.html">Similar Motifs Found</A></TD><TD><A target="_blank" HREF="homerResults/motif8.motif">motif file (matrix)</A></TD></TR> +</TABLE> +<P></P> +</BODY></HTML>