Mercurial > repos > iuc > homer_gtf_to_annotations

annotate test-data/motif_test1/homerResults/motif5.similar.html @ 3:7c5da353e460 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
author iuc
date Thu, 06 Apr 2023 16:23:06 +0000
parents 8ebb6520eef4
children
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8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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1 <HTML><HEAD><TITLE>motif5</TITLE></HEAD>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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2 <H2>Information for motif5</H2>
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3 <svg width="255" height="50">
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4 <g font-family="Arial" font-weight="bold" font-size="66.5">
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8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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83 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,100,34)">C</text>
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85 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
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86 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
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87 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text>
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88 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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90 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
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91 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text>
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92 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,39)">G</text>
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93 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,151,34)">T</text>
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95 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
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96 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
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97 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
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100 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,49)">C</text>
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102 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
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105 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
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106 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
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107 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,39)">G</text>
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108 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,226,34)">T</text>
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110 </g>
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111 </svg>
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112 <BR/>
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113 <TABLE border="1" cellpading="0" cellspacing="0">
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114 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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115 <TR><TD>log p-value:</TD><TD>-2.907e+00</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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116 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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117 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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118 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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119 <TR><TD>Number of Background Sequences with motif</TD><TD>219.8</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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120 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.48%</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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121 <TR><TD>Average Position of motif in Targets</TD><TD>113.0 +/- 0.0bp</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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122 <TR><TD>Average Position of motif in Background</TD><TD>94.6 +/- 75.6bp</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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123 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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124 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
8ebb6520eef4 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e49d856e0181edc6120220a1b819cba2466a4289"
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125 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif5.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif5RV.motif">reverse opposite</A></TD></TR>
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126 </TABLE>
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127 <H3>Similar de novo motifs found</H3>
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128 <TABLE border="1" cellpading="0" cellspacing="0">
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129 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
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130 </TABLE>
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131 <P></P>
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132 </BODY></HTML>