Mercurial > repos > iuc > homer_gtf_to_annotations

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit e6639e130c5bf50f489dd09e38a1cbc712280fff
author iuc
date Fri, 07 Apr 2023 15:02:25 +0000
parents 7c5da353e460
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1 <HTML><HEAD><TITLE>./ - Homer Known Motif Enrichment Results</TITLE></HEAD>
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2 <BODY>
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3 <H1>Homer Known Motif Enrichment Results (./)</H1>
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4 <A HREF="homerResults.html">Homer <i>de novo</i> Motif Results</A><BR/>
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5 <A HREF="geneOntology.html">Gene Ontology Enrichment Results</A><BR/>
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6 <A HREF="knownResults.txt">Known Motif Enrichment Results (txt file)</A><BR/>
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7 Total Target Sequences = 15, Total Background Sequences = 68</BR>
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8 <TABLE border="1" cellpading="0" cellspacing="0">
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9 <TR><TD>Rank</TD><TD>Motif</TD><TD>Name</TD><TD>P-value</TD><TD>log P-pvalue</TD><TD>q-value (Benjamini)</TD><TD># Target Sequences with Motif</TD><TD>% of Targets Sequences with Motif</TD><TD># Background Sequences with Motif</TD><TD>% of Background Sequences with Motif</TD><TD>Motif File</TD>
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10 <TD>SVG</TD></TR>
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11 <TR><TD>1</TD><TD>
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12 <svg width="380" height="50">
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13 <g font-family="Arial" font-weight="bold" font-size="66.5">
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7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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74 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.028,301,49)">T</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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75 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.048,300,47.6)">C</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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76 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.136,300,45.2)">G</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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77 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.788,302,38.4)">A</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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78
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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79 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.039,326,49)">T</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
diff changeset
80 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.041,325,47.05)">C</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
diff changeset
81 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.053,325,45)">G</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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82 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.867,327,42.35)">A</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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83
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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84 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.175,350,49)">C</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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85 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.190,351,40.25)">T</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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86 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.222,350,30.75)">G</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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87 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.412,352,19.65)">A</text>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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88
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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89 </g>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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90 </svg>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
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91
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
parents:
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92 </TD><TD>Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer</TD><TD>1e-2</TD><TD>-5.538e+00</TD><TD>1.0000</TD><TD>9.0</TD><TD>60.00%</TD><TD>14.0</TD><TD>20.59%</TD><TD><A target="_blank" HREF="knownResults//known1.motif">motif file (matrix)</A></TD>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
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93 <TD><A HREF="knownResults//known1.logo.svg">svg</A></TD>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
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94 </TR>
7c5da353e460 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 16a919905f336e34e237388c1921d0f4f8a368af
iuc
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95 </TABLE></BODY></HTML>