Mercurial > repos > iuc > homer_scanmotifgenomewide

comparison test-data/motif_test1/homerResults/motif4.similar.html @ 0:db456c398880 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/homer commit 186b72f369eb2a11d92f4d63cac2e8ebe386b9bd"
author iuc
date Mon, 13 Dec 2021 15:13:33 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:db456c398880
1 <HTML><HEAD><TITLE>motif4</TITLE></HEAD>
2 <H2>Information for motif4</H2>
3 <svg width="305" height="50">
4 <g font-family="Arial" font-weight="bold" font-size="66.5">
5 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
6 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text>
7 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
8 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,0,34)">C</text>
9
10 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
11 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,44)">C</text>
12 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,39)">G</text>
13 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,26,34)">T</text>
14
15 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
16 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,44)">G</text>
17 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,51,39)">T</text>
18 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,50,34)">C</text>
19
20 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
21 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,75,44)">G</text>
22 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
23 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,75,34)">C</text>
24
25 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,102,49)">A</text>
26 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,44)">C</text>
27 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,39)">G</text>
28 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,101,34)">T</text>
29
30 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
31 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
32 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
33 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,125,34)">G</text>
34
35 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,49)">C</text>
36 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
37 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
38 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,152,34)">A</text>
39
40 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
41 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,44)">C</text>
42 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
43 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,175,34)">G</text>
44
45 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,49)">C</text>
46 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,44)">G</text>
47 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
48 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,202,34)">A</text>
49
50 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
51 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,225,44)">G</text>
52 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
53 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,225,34)">C</text>
54
55 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,252,49)">A</text>
56 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,250,44)">C</text>
57 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,39)">G</text>
58 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,251,34)">T</text>
59
60 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,277,49)">A</text>
61 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,44)">C</text>
62 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
63 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,275,34)">G</text>
64
65 </g>
66 </svg>
67 <BR/>
68 Reverse Opposite:<BR/><svg width="305" height="50">
69 <g font-family="Arial" font-weight="bold" font-size="66.5">
70 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
71 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text>
72 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
73 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,0,34)">C</text>
74
75 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text>
76 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text>
77 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text>
78 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text>
79
80 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
81 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text>
82 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,51,39)">T</text>
83 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,50,34)">G</text>
84
85 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
86 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,44)">C</text>
87 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,75,39)">G</text>
88 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,76,34)">T</text>
89
90 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,102,49)">A</text>
91 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
92 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
93 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,100,34)">C</text>
94
95 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
96 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
97 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text>
98 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
99
100 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
101 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
102 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
103 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,150,34)">C</text>
104
105 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,49)">C</text>
106 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
107 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
108 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,177,34)">A</text>
109
110 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
111 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text>
112 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,201,39)">T</text>
113 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,200,34)">G</text>
114
115 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
116 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
117 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
118 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,225,34)">G</text>
119
120 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,250,49)">C</text>
121 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,250,44)">G</text>
122 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,251,39)">T</text>
123 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,252,34)">A</text>
124
125 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,277,49)">A</text>
126 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,275,44)">C</text>
127 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,276,39)">T</text>
128 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,275,34)">G</text>
129
130 </g>
131 </svg>
132 <BR/>
133 <TABLE border="1" cellpading="0" cellspacing="0">
134 <TR><TD>p-value:</TD><TD>1e-1</TD></TR>
135 <TR><TD>log p-value:</TD><TD>-2.912e+00</TD></TR>
136 <TR><TD>Information Content per bp:</TD><TD>1.530</TD></TR>
137 <TR><TD>Number of Target Sequences with motif</TD><TD>1.0</TD></TR>
138 <TR><TD>Percentage of Target Sequences with motif</TD><TD>100.00%</TD></TR>
139 <TR><TD>Number of Background Sequences with motif</TD><TD>218.1</TD></TR>
140 <TR><TD>Percentage of Background Sequences with motif</TD><TD>5.44%</TD></TR>
141 <TR><TD>Average Position of motif in Targets</TD><TD>180.0 +/- 0.0bp</TD></TR>
142 <TR><TD>Average Position of motif in Background</TD><TD>95.7 +/- 83.7bp</TD></TR>
143 <TR><TD>Strand Bias (log2 ratio + to - strand density)</TD><TD>10.0</TD></TR>
144 <TR><TD>Multiplicity (# of sites on avg that occur together)</TD><TD>1.00</TD></TR>
145 <TR><TD>Motif File:</TD><TD><A target="_blank" HREF="motif4.motif">file (matrix)</A><BR/><A target="_blank" HREF="motif4RV.motif">reverse opposite</A></TD></TR>
146 </TABLE>
147 <H3>Similar de novo motifs found</H3>
148 <TABLE border="1" cellpading="0" cellspacing="0">
149 <TR><TD>Rank</TD><TD>Match Score</TD><TD>Redundant Motif</TD><TD>P-value</TD><TD>log P-value</TD><TD>% of Targets</TD><TD>% of Background</TD><TD>Motif file</TD></TR>
150 <TR><TD>1</TD><TD>0.913</TD><TD><svg width="255" height="50">
151 <g font-family="Arial" font-weight="bold" font-size="66.5">
152 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
153 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,0,44)">G</text>
154 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
155 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,0,34)">C</text>
156
157 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,27,49)">A</text>
158 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text>
159 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text>
160 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,25,34)">C</text>
161
162 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
163 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text>
164 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,50,39)">G</text>
165 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,51,34)">T</text>
166
167 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,77,49)">A</text>
168 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,44)">C</text>
169 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
170 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,75,34)">G</text>
171
172 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,100,49)">C</text>
173 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
174 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
175 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,102,34)">A</text>
176
177 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
178 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
179 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,126,39)">T</text>
180 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,125,34)">G</text>
181
182 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,49)">C</text>
183 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,150,44)">G</text>
184 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
185 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,152,34)">A</text>
186
187 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,177,49)">A</text>
188 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
189 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
190 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,175,34)">C</text>
191
192 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,202,49)">A</text>
193 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,200,44)">C</text>
194 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,200,39)">G</text>
195 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,201,34)">T</text>
196
197 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,227,49)">A</text>
198 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,225,44)">C</text>
199 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,226,39)">T</text>
200 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,225,34)">G</text>
201
202 </g>
203 </svg>
204
205 </TD><TD>1e-1</TD><TD>-2.902420</TD><TD>100.00%</TD><TD>5.49%</TD><TD><A target="_blank" HREF="motif4.similar1.motif">motif file (matrix)</A></TD></TR>
206 <TR><TD>2</TD><TD>0.714</TD><TD><svg width="205" height="50">
207 <g font-family="Arial" font-weight="bold" font-size="66.5">
208 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,2,49)">A</text>
209 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,0,44)">C</text>
210 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,1,39)">T</text>
211 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,0,34)">G</text>
212
213 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,25,49)">C</text>
214 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,25,44)">G</text>
215 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,26,39)">T</text>
216 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,27,34)">A</text>
217
218 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,52,49)">A</text>
219 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,50,44)">C</text>
220 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,51,39)">T</text>
221 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,50,34)">G</text>
222
223 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,75,49)">C</text>
224 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,75,44)">G</text>
225 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,76,39)">T</text>
226 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,77,34)">A</text>
227
228 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,102,49)">A</text>
229 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,100,44)">G</text>
230 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,101,39)">T</text>
231 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.700,100,34)">C</text>
232
233 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,127,49)">A</text>
234 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,125,44)">C</text>
235 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,125,39)">G</text>
236 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.700,126,34)">T</text>
237
238 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.100,152,49)">A</text>
239 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,150,44)">C</text>
240 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,151,39)">T</text>
241 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.700,150,34)">G</text>
242
243 <text fill="#0000EE" x="0" y="0" transform="matrix(0.59,0,0,0.100,175,49)">C</text>
244 <text fill="#F9A500" x="0" y="0" transform="matrix(0.55,0,0,0.100,175,44)">G</text>
245 <text fill="#DD0000" x="0" y="0" transform="matrix(0.65,0,0,0.100,176,39)">T</text>
246 <text fill="#00BB00" x="0" y="0" transform="matrix(0.53,0,0,0.700,177,34)">A</text>
247
248 </g>
249 </svg>
250
251 </TD><TD>1e-1</TD><TD>-2.897885</TD><TD>100.00%</TD><TD>5.54%</TD><TD><A target="_blank" HREF="motif4.similar2.motif">motif file (matrix)</A></TD></TR>
252 </TABLE>
253 <P></P>
254 </BODY></HTML>