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comparison test-data/NC_004668_137848_164286_detected_ME.summary @ 3:2bb38197ff75 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author iuc
date Tue, 06 Dec 2022 10:40:53 +0000
parents 7c77b2896ac2
children 28e82853c217
comparison
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2:f08181349fc4 3:2bb38197ff75
1 ##################### Mobile elements detection statistics #####################
2 # Number of complete elements
3 Complete ICE (4 types of SP): 1
4 Complete IME (R+I, R+C+I): 0
5 1
6 # Number of complete modules 2 ##################### Main parameters of the ICEscreen analysis #####################
7 Conjugation module (R+C+V): 0 3 Maximum distance in CDS between consecutive SPs within a segments: 100
8 Mobilizable element (R+C with size <= 10 CDS): 0 4 Maximum distance in CDS between consecutive SPs within an IME element: 14
9 5
10 # Number of partial elements
11 Partial ICE (at least V): 0
12 Other partial element (R+C, R+V, V+C with size > 10 CDS): 0
13 6
14 # Composite elements 7 ##################### ICEscreen statistics for genome accession NC_004668.1 #####################
15 Total nested elements (partial or complete): 0
16 Host element: 0
17 Guest element: 0
18 Element that are both host and guest: 0
19 8
20 ################### Signature proteins detection statistics #################### 9 ##### Mobile elements #####
21 # Total SP detected 10 ## Number of complete elements
22 Total SP: 4 11 Complete ICE (4 types of SP): 1
23 Total Integrase: 1 12 Complete IME (R+I, R+C+I with distance between consecutive SPs <= 14 CDSs): 0
24 Total Relaxase: 1 13 ## Number of complete modules
25 Total Coupling protein: 1 14 Conjugation module (R+C+V): 0
26 Total VirB4: 1 15 Mobilizable element (R+C with distance between consecutive SPs <= 14 CDS): 0
16 ## Number of partial elements
17 Partial ICE (at least V): 0
18 Other partial element (R+C, R+V, V+C with distance between consecutive SPs > 14 CDS): 0
19 ## Composite elements
20 Total nested elements (partial or complete): 0
21 Host element: 0
22 Guest element: 0
23 Element that are both host and guest: 0
27 24
28 # Unassigned SP 25 ##### Signature proteins #####
29 Unassigned SP: 0 26 ## Total SPs detected
30 Unassigned Integrase: 0 27 Total SPs: 4
31 Unassigned Relaxase: 0 28 Total Integrase: 1
32 Unassigned Coupling protein: 0 29 Total Relaxase: 1
33 Unassigned VirB4: 0 30 Total Coupling protein: 1
31 Total VirB4: 1
32 ## Unassigned SPs
33 Unassigned SPs: 0
34 Unassigned Integrase: 0
35 Unassigned Relaxase: 0
36 Unassigned Coupling protein: 0
37 Unassigned VirB4: 0
34 38
35 ############################# Segments statistics ############################## 39 ##### Segments #####
36 Number of segments: 1 40 Number of segments with one element: 1
37 Segment with one element: 1 41 Number of segments with several elements: 0
38 Segment with several elements: 0 42 Number of segments with nested elements: 0
39 Segment with nested elements: 0 43 Number of segments with exclusively isolated SPs to manually verify: 0
40 Segment with no element: 0
41 44
42 ############################### Parameters used ################################
43 Maximum CDS numbers in initial segments: 100
44 Maximum CDS numbers in an IME element: 10