diff test-data/NC_004668_137848_164286_detected_ME.summary @ 3:2bb38197ff75 draft

planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author iuc
date Tue, 06 Dec 2022 10:40:53 +0000
parents 7c77b2896ac2
children 28e82853c217
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--- a/test-data/NC_004668_137848_164286_detected_ME.summary	Sat Apr 02 21:05:10 2022 +0000
+++ b/test-data/NC_004668_137848_164286_detected_ME.summary	Tue Dec 06 10:40:53 2022 +0000
@@ -1,44 +1,44 @@
-##################### Mobile elements detection statistics #####################
-# Number of complete elements
-Complete ICE (4 types of SP): 1
-Complete IME (R+I, R+C+I): 0
-
-# Number of complete modules
-Conjugation module (R+C+V): 0
-Mobilizable element (R+C with size <= 10 CDS): 0
 
-# Number of partial elements
-Partial ICE (at least V): 0
-Other partial element (R+C, R+V, V+C with size > 10 CDS): 0
+##################### Main parameters of the ICEscreen analysis #####################
+Maximum distance in CDS between consecutive SPs within a segments:	100
+Maximum distance in CDS between consecutive SPs within an IME element:	14
 
-# Composite elements
-Total nested elements (partial or complete): 0
-Host element: 0
-Guest element: 0
-Element that are both host and guest: 0
+
+##################### ICEscreen statistics for genome accession NC_004668.1 #####################
 
-################### Signature proteins detection statistics ####################
-# Total SP detected
-Total SP: 4
-Total Integrase: 1
-Total Relaxase: 1
-Total Coupling protein: 1
-Total VirB4: 1
+##### Mobile elements #####
+## Number of complete elements
+Complete ICE (4 types of SP):	1
+Complete IME (R+I, R+C+I with distance between consecutive SPs <= 14 CDSs):	0
+## Number of complete modules
+Conjugation module (R+C+V):	0
+Mobilizable element (R+C with distance between consecutive SPs <= 14 CDS):	0
+## Number of partial elements
+Partial ICE (at least V):	0
+Other partial element (R+C, R+V, V+C with distance between consecutive SPs > 14 CDS):	0
+## Composite elements
+Total nested elements (partial or complete):	0
+Host element:	0
+Guest element:	0
+Element that are both host and guest:	0
 
-# Unassigned SP
-Unassigned SP: 0
-Unassigned Integrase: 0
-Unassigned Relaxase: 0
-Unassigned Coupling protein: 0
-Unassigned VirB4: 0
+##### Signature proteins #####
+## Total SPs detected
+Total SPs:	4
+Total Integrase:	1
+Total Relaxase:	1
+Total Coupling protein:	1
+Total VirB4:	1
+## Unassigned SPs
+Unassigned SPs:	0
+Unassigned Integrase:	0
+Unassigned Relaxase:	0
+Unassigned Coupling protein:	0
+Unassigned VirB4:	0
 
-############################# Segments statistics ##############################
-Number of segments: 1
-Segment with one element: 1
-Segment with several elements: 0
-Segment with nested elements: 0
-Segment with no element: 0
+##### Segments #####
+Number of segments with one element:	1
+Number of segments with several elements:	0
+Number of segments with nested elements:	0
+Number of segments with exclusively isolated SPs to manually verify:	0
 
-############################### Parameters used ################################
-Maximum CDS numbers in initial segments: 100
-Maximum CDS numbers in an IME element: 10