Mercurial > repos > iuc > icescreen

comparison test-data/NC_004668_137848_164286_icescreen.embl @ 3:2bb38197ff75 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author iuc
date Tue, 06 Dec 2022 10:40:53 +0000
parents 7c77b2896ac2
children
comparison
equal deleted inserted replaced
2:f08181349fc4 3:2bb38197ff75
9 OS . 9 OS .
10 OC . 10 OC .
11 XX 11 XX
12 FH Key Location/Qualifiers 12 FH Key Location/Qualifiers
13 FH 13 FH
14 FT CDS 1..1511 14 FT CDS 1..1512
15 FT /origid="WP_002359295.1" 15 FT /origid="EF_RS00630"
16 FT /function="Coupling Protein" 16 FT /function="Coupling Protein"
17 FT /protein_id="WP_002359295.1" 17 FT /protein_id="WP_002359295.1"
18 FT /locus_tag="EF_RS00630" 18 FT /locus_tag="EF_RS00630"
19 FT /codon_start=1 19 FT /codon_start=1
20 FT /color=6 20 FT /color=6
21 FT /note="ICEscreen prediction: Coupling protein; BlastP 21 FT /note="ICEscreen prediction: Coupling protein; BlastP
22 FT result (Annotation confidence: HIGH): Coupling protein TcpA 22 FT result (Annotation confidence: HIGH): Coupling protein TcpA
23 FT [Hit with AAO80014; Identity:100.00%; E-value:0; Query 23 FT [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00;
24 FT coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM 24 FT Query coverage:100.00%]; Hmmscan result: TcpA [Hit with
25 FT profile; E-value:0; i-Evalue:0]" 25 FT tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]"
26 FT CDS 3098..4380 26 FT CDS 3098..4381
27 FT /origid="WP_002359299.1" 27 FT /origid="EF_RS00650"
28 FT /function="Relaxase" 28 FT /function="Relaxase"
29 FT /protein_id="WP_002359299.1" 29 FT /protein_id="WP_002359299.1"
30 FT /locus_tag="EF_RS00650" 30 FT /locus_tag="EF_RS00650"
31 FT /codon_start=1 31 FT /codon_start=1
32 FT /color=7 32 FT /color=7
33 FT /note="ICEscreen prediction: Relaxase; BlastP result 33 FT /note="ICEscreen prediction: Relaxase; BlastP result
34 FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit 34 FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
35 FT with AAO80018; Identity:99.77%; E-value:0; Query 35 FT with AAO80018; Identity:99.77%; E-value:0.00e+00; Query
36 FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT 36 FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
37 FT HMM profile; E-value:0; i-Evalue:0]" 37 FT HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]"
38 FT CDS 17920..20426 38 FT CDS 17920..20427
39 FT /origid="WP_002359320.1" 39 FT /origid="EF_RS00720"
40 FT /function="VirB4" 40 FT /function="VirB4"
41 FT /protein_id="WP_002359320.1" 41 FT /protein_id="WP_002359320.1"
42 FT /locus_tag="EF_RS00720" 42 FT /locus_tag="EF_RS00720"
43 FT /codon_start=1 43 FT /codon_start=1
44 FT /color="184 134 11" 44 FT /color="184 134 11"
45 FT /note="ICEscreen prediction: VirB4; BlastP result 45 FT /note="ICEscreen prediction: VirB4; BlastP result
46 FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; 46 FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
47 FT Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan 47 FT Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%];
48 FT result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0; 48 FT Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile;
49 FT i-Evalue:0]" 49 FT E-value:1.80e-28; i-Evalue:2.40e-28]"
50 FT CDS 25273..26438 50 FT CDS 25273..26439
51 FT /origid="WP_002392915.1" 51 FT /origid="EF_RS00760"
52 FT /function="Tyrosine Integrase" 52 FT /function="Tyrosine Integrase"
53 FT /protein_id="WP_002392915.1" 53 FT /protein_id="WP_002392915.1"
54 FT /locus_tag="EF_RS00760" 54 FT /locus_tag="EF_RS00760"
55 FT /codon_start=1 55 FT /codon_start=1
56 FT /color=8 56 FT /color=8
57 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP 57 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP
58 FT result (Annotation confidence: HIGH): Tyrosine integrase 58 FT result (Annotation confidence: HIGH): Tyrosine integrase
59 FT [Hit with AAO80040; Identity:100.00%; E-value:0; Query 59 FT [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00;
60 FT coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit 60 FT Query coverage:100.00%]; Hmmscan result: Tyrosine integrase
61 FT with Phage_integrase HMM profile; E-value:0; i-Evalue:0]" 61 FT [Hit with Phage_integrase HMM profile; E-value:4.40e-29;
62 FT i-Evalue:9.70e-29]"
62 FT mobile_element 1..26439 63 FT mobile_element 1..26439
63 FT /mobile_element_type="other: integrative and conjugative 64 FT /mobile_element_type="other: integrative and conjugative
64 FT element" 65 FT element"
65 FT /note="ICEscreen prediction: Putative ICE (one integrase - 66 FT /note="ICEscreen prediction: Putative ICE (one integrase
66 FT Tyr) [Element structure: Single; ICE superfamily: Tn916; 67 FT Tyr) [Element structure: Single; ICE superfamily: Tn916;
67 FT ICE family: ICESt3; Relaxase family: MOBT; Coupling protein 68 FT ICE family: ICESt3; Relaxase family: - (MOBT); Coupling
68 FT family: TcpA] (ICEscreen ID: 2)" 69 FT protein family: TcpA] (ICEscreen ID: ID_1)"
69 FT /color=15 70 FT /color=15
70 XX 71 XX
71 SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other; 72 SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;
72 // 73 //