diff test-data/NC_004668_137848_164286_icescreen.embl @ 3:2bb38197ff75 draft

planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author iuc
date Tue, 06 Dec 2022 10:40:53 +0000
parents 7c77b2896ac2
children
line wrap: on
line diff
--- a/test-data/NC_004668_137848_164286_icescreen.embl	Sat Apr 02 21:05:10 2022 +0000
+++ b/test-data/NC_004668_137848_164286_icescreen.embl	Tue Dec 06 10:40:53 2022 +0000
@@ -11,8 +11,8 @@
 XX
 FH   Key             Location/Qualifiers
 FH
-FT   CDS             1..1511
-FT                   /origid="WP_002359295.1"
+FT   CDS             1..1512
+FT                   /origid="EF_RS00630"
 FT                   /function="Coupling Protein"
 FT                   /protein_id="WP_002359295.1"
 FT                   /locus_tag="EF_RS00630"
@@ -20,11 +20,11 @@
 FT                   /color=6
 FT                   /note="ICEscreen prediction: Coupling protein; BlastP
 FT                   result (Annotation confidence: HIGH): Coupling protein TcpA
-FT                   [Hit with AAO80014; Identity:100.00%; E-value:0; Query
-FT                   coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM
-FT                   profile; E-value:0; i-Evalue:0]"
-FT   CDS             3098..4380
-FT                   /origid="WP_002359299.1"
+FT                   [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00;
+FT                   Query coverage:100.00%]; Hmmscan result: TcpA [Hit with
+FT                   tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]"
+FT   CDS             3098..4381
+FT                   /origid="EF_RS00650"
 FT                   /function="Relaxase"
 FT                   /protein_id="WP_002359299.1"
 FT                   /locus_tag="EF_RS00650"
@@ -32,11 +32,11 @@
 FT                   /color=7
 FT                   /note="ICEscreen prediction: Relaxase; BlastP result
 FT                   (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
-FT                   with AAO80018; Identity:99.77%; E-value:0; Query
+FT                   with AAO80018; Identity:99.77%; E-value:0.00e+00; Query
 FT                   coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
-FT                   HMM profile; E-value:0; i-Evalue:0]"
-FT   CDS             17920..20426
-FT                   /origid="WP_002359320.1"
+FT                   HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]"
+FT   CDS             17920..20427
+FT                   /origid="EF_RS00720"
 FT                   /function="VirB4"
 FT                   /protein_id="WP_002359320.1"
 FT                   /locus_tag="EF_RS00720"
@@ -44,11 +44,11 @@
 FT                   /color="184 134 11"
 FT                   /note="ICEscreen prediction: VirB4; BlastP result
 FT                   (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
-FT                   Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan
-FT                   result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0;
-FT                   i-Evalue:0]"
-FT   CDS             25273..26438
-FT                   /origid="WP_002392915.1"
+FT                   Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%];
+FT                   Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile;
+FT                   E-value:1.80e-28; i-Evalue:2.40e-28]"
+FT   CDS             25273..26439
+FT                   /origid="EF_RS00760"
 FT                   /function="Tyrosine Integrase"
 FT                   /protein_id="WP_002392915.1"
 FT                   /locus_tag="EF_RS00760"
@@ -56,16 +56,17 @@
 FT                   /color=8
 FT                   /note="ICEscreen prediction: Tyrosine integrase; BlastP
 FT                   result (Annotation confidence: HIGH): Tyrosine integrase
-FT                   [Hit with AAO80040; Identity:100.00%; E-value:0; Query
-FT                   coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit
-FT                   with Phage_integrase HMM profile; E-value:0; i-Evalue:0]"
+FT                   [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00;
+FT                   Query coverage:100.00%]; Hmmscan result: Tyrosine integrase
+FT                   [Hit with Phage_integrase HMM profile; E-value:4.40e-29;
+FT                   i-Evalue:9.70e-29]"
 FT   mobile_element  1..26439
 FT                   /mobile_element_type="other: integrative and conjugative
 FT                   element"
-FT                   /note="ICEscreen prediction: Putative ICE (one integrase -
+FT                   /note="ICEscreen prediction: Putative ICE (one integrase
 FT                   Tyr) [Element structure: Single; ICE superfamily: Tn916;
-FT                   ICE family: ICESt3; Relaxase family: MOBT; Coupling protein
-FT                   family: TcpA] (ICEscreen ID: 2)"
+FT                   ICE family: ICESt3; Relaxase family: - (MOBT); Coupling
+FT                   protein family: TcpA] (ICEscreen ID: ID_1)"
 FT                   /color=15
 XX
 SQ   Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;