Mercurial > repos > iuc > icescreen
diff test-data/NC_004668_137848_164286_icescreen.embl @ 3:2bb38197ff75 draft
planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author | iuc |
---|---|
date | Tue, 06 Dec 2022 10:40:53 +0000 |
parents | 7c77b2896ac2 |
children |
line wrap: on
line diff
--- a/test-data/NC_004668_137848_164286_icescreen.embl Sat Apr 02 21:05:10 2022 +0000 +++ b/test-data/NC_004668_137848_164286_icescreen.embl Tue Dec 06 10:40:53 2022 +0000 @@ -11,8 +11,8 @@ XX FH Key Location/Qualifiers FH -FT CDS 1..1511 -FT /origid="WP_002359295.1" +FT CDS 1..1512 +FT /origid="EF_RS00630" FT /function="Coupling Protein" FT /protein_id="WP_002359295.1" FT /locus_tag="EF_RS00630" @@ -20,11 +20,11 @@ FT /color=6 FT /note="ICEscreen prediction: Coupling protein; BlastP FT result (Annotation confidence: HIGH): Coupling protein TcpA -FT [Hit with AAO80014; Identity:100.00%; E-value:0; Query -FT coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM -FT profile; E-value:0; i-Evalue:0]" -FT CDS 3098..4380 -FT /origid="WP_002359299.1" +FT [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00; +FT Query coverage:100.00%]; Hmmscan result: TcpA [Hit with +FT tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]" +FT CDS 3098..4381 +FT /origid="EF_RS00650" FT /function="Relaxase" FT /protein_id="WP_002359299.1" FT /locus_tag="EF_RS00650" @@ -32,11 +32,11 @@ FT /color=7 FT /note="ICEscreen prediction: Relaxase; BlastP result FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit -FT with AAO80018; Identity:99.77%; E-value:0; Query +FT with AAO80018; Identity:99.77%; E-value:0.00e+00; Query FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT -FT HMM profile; E-value:0; i-Evalue:0]" -FT CDS 17920..20426 -FT /origid="WP_002359320.1" +FT HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]" +FT CDS 17920..20427 +FT /origid="EF_RS00720" FT /function="VirB4" FT /protein_id="WP_002359320.1" FT /locus_tag="EF_RS00720" @@ -44,11 +44,11 @@ FT /color="184 134 11" FT /note="ICEscreen prediction: VirB4; BlastP result FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; -FT Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan -FT result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0; -FT i-Evalue:0]" -FT CDS 25273..26438 -FT /origid="WP_002392915.1" +FT Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%]; +FT Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile; +FT E-value:1.80e-28; i-Evalue:2.40e-28]" +FT CDS 25273..26439 +FT /origid="EF_RS00760" FT /function="Tyrosine Integrase" FT /protein_id="WP_002392915.1" FT /locus_tag="EF_RS00760" @@ -56,16 +56,17 @@ FT /color=8 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP FT result (Annotation confidence: HIGH): Tyrosine integrase -FT [Hit with AAO80040; Identity:100.00%; E-value:0; Query -FT coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit -FT with Phage_integrase HMM profile; E-value:0; i-Evalue:0]" +FT [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00; +FT Query coverage:100.00%]; Hmmscan result: Tyrosine integrase +FT [Hit with Phage_integrase HMM profile; E-value:4.40e-29; +FT i-Evalue:9.70e-29]" FT mobile_element 1..26439 FT /mobile_element_type="other: integrative and conjugative FT element" -FT /note="ICEscreen prediction: Putative ICE (one integrase - +FT /note="ICEscreen prediction: Putative ICE (one integrase FT Tyr) [Element structure: Single; ICE superfamily: Tn916; -FT ICE family: ICESt3; Relaxase family: MOBT; Coupling protein -FT family: TcpA] (ICEscreen ID: 2)" +FT ICE family: ICESt3; Relaxase family: - (MOBT); Coupling +FT protein family: TcpA] (ICEscreen ID: ID_1)" FT /color=15 XX SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;