Mercurial > repos > iuc > icescreen

comparison test-data/NC_004668_137848_164286_icescreen.gb @ 3:2bb38197ff75 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author iuc
date Tue, 06 Dec 2022 10:40:53 +0000
parents 7c77b2896ac2
children
comparison
equal deleted inserted replaced
2:f08181349fc4 3:2bb38197ff75
605 LKSIAPVHIQKWQNELLEQYENTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKS 605 LKSIAPVHIQKWQNELLEQYENTYVRNIYGLFQMSLDRAVVLGMISSNPAKIVGNVKKS
606 KKEIDFWTKEEFEKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRR 606 KKEIDFWTKEEFEKVVKTFYVEDYYQNFSFICIWLLFMTGMRIGEATALTWKDVNLDRR
607 YLTVKKSLYYKNAQTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSY 607 YLTVKKSLYYKNAQTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSY
608 NSVPTQKHTVRHIIKRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQ 608 NSVPTQKHTVRHIIKRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQ
609 TTLGTYGHLYPSSSTEIANELKGIVNVEFTNQNMASEVTNQFTKGVKK" 609 TTLGTYGHLYPSSSTEIANELKGIVNVEFTNQNMASEVTNQFTKGVKK"
610 CDS 1..1511 610 CDS 1..1512
611 /origid="WP_002359295.1" 611 /origid="EF_RS00630"
612 /function="Coupling Protein" 612 /function="Coupling Protein"
613 /protein_id="WP_002359295.1" 613 /protein_id="WP_002359295.1"
614 /locus_tag="EF_RS00630" 614 /locus_tag="EF_RS00630"
615 /codon_start=1 615 /codon_start=1
616 /color=6 616 /color=6
617 /note="ICEscreen prediction: Coupling protein; BlastP 617 /note="ICEscreen prediction: Coupling protein; BlastP
618 result (Annotation confidence: HIGH): Coupling protein TcpA 618 result (Annotation confidence: HIGH): Coupling protein TcpA
619 [Hit with AAO80014; Identity:100.00%; E-value:0; Query 619 [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00;
620 coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM 620 Query coverage:100.00%]; Hmmscan result: TcpA [Hit with
621 profile; E-value:0; i-Evalue:0]" 621 tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]"
622 CDS 3098..4380 622 CDS 3098..4381
623 /origid="WP_002359299.1" 623 /origid="EF_RS00650"
624 /function="Relaxase" 624 /function="Relaxase"
625 /protein_id="WP_002359299.1" 625 /protein_id="WP_002359299.1"
626 /locus_tag="EF_RS00650" 626 /locus_tag="EF_RS00650"
627 /codon_start=1 627 /codon_start=1
628 /color=7 628 /color=7
629 /note="ICEscreen prediction: Relaxase; BlastP result 629 /note="ICEscreen prediction: Relaxase; BlastP result
630 (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit 630 (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
631 with AAO80018; Identity:99.77%; E-value:0; Query 631 with AAO80018; Identity:99.77%; E-value:0.00e+00; Query
632 coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT 632 coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
633 HMM profile; E-value:0; i-Evalue:0]" 633 HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]"
634 CDS 17920..20426 634 CDS 17920..20427
635 /origid="WP_002359320.1" 635 /origid="EF_RS00720"
636 /function="VirB4" 636 /function="VirB4"
637 /protein_id="WP_002359320.1" 637 /protein_id="WP_002359320.1"
638 /locus_tag="EF_RS00720" 638 /locus_tag="EF_RS00720"
639 /codon_start=1 639 /codon_start=1
640 /color="184 134 11" 640 /color="184 134 11"
641 /note="ICEscreen prediction: VirB4; BlastP result 641 /note="ICEscreen prediction: VirB4; BlastP result
642 (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; 642 (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
643 Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan 643 Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%];
644 result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0; 644 Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile;
645 i-Evalue:0]" 645 E-value:1.80e-28; i-Evalue:2.40e-28]"
646 CDS 25273..26438 646 CDS 25273..26439
647 /origid="WP_002392915.1" 647 /origid="EF_RS00760"
648 /function="Tyrosine Integrase" 648 /function="Tyrosine Integrase"
649 /protein_id="WP_002392915.1" 649 /protein_id="WP_002392915.1"
650 /locus_tag="EF_RS00760" 650 /locus_tag="EF_RS00760"
651 /codon_start=1 651 /codon_start=1
652 /color=8 652 /color=8
653 /note="ICEscreen prediction: Tyrosine integrase; BlastP 653 /note="ICEscreen prediction: Tyrosine integrase; BlastP
654 result (Annotation confidence: HIGH): Tyrosine integrase 654 result (Annotation confidence: HIGH): Tyrosine integrase
655 [Hit with AAO80040; Identity:100.00%; E-value:0; Query 655 [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00;
656 coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit 656 Query coverage:100.00%]; Hmmscan result: Tyrosine integrase
657 with Phage_integrase HMM profile; E-value:0; i-Evalue:0]" 657 [Hit with Phage_integrase HMM profile; E-value:4.40e-29;
658 i-Evalue:9.70e-29]"
658 mobile_element 1..26439 659 mobile_element 1..26439
659 /mobile_element_type="other: integrative and conjugative 660 /mobile_element_type="other: integrative and conjugative
660 element" 661 element"
661 /note="ICEscreen prediction: Putative ICE (one integrase - 662 /note="ICEscreen prediction: Putative ICE (one integrase
662 Tyr) [Element structure: Single; ICE superfamily: Tn916; 663 Tyr) [Element structure: Single; ICE superfamily: Tn916;
663 ICE family: ICESt3; Relaxase family: MOBT; Coupling protein 664 ICE family: ICESt3; Relaxase family: - (MOBT); Coupling
664 family: TcpA] (ICEscreen ID: 2)" 665 protein family: TcpA] (ICEscreen ID: ID_1)"
665 /color=15 666 /color=15
666 ORIGIN 667 ORIGIN
667 1 atgttaaaaa aattatttag atatagagga aggcgtattc gttattcttc aagaaacctg 668 1 atgttaaaaa aattatttag atatagagga aggcgtattc gttattcttc aagaaacctg
668 61 ttggcactct atcgagtgtt attttttatg ccaattttag cttgtttagg gtattttgtt 669 61 ttggcactct atcgagtgtt attttttatg ccaattttag cttgtttagg gtattttgtt
669 121 ggctataaat ggatttatcc tttatatctt tcaaatccgc ctgattggaa aatatacatt 670 121 ggctataaat ggatttatcc tttatatctt tcaaatccgc ctgattggaa aatatacatt