Mercurial > repos > iuc > icescreen
diff test-data/NC_004668_137848_164286_icescreen.gb @ 3:2bb38197ff75 draft
planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 29cbe5a71212ff13e8d63e9ea57243fd0aeacbf9
author | iuc |
---|---|
date | Tue, 06 Dec 2022 10:40:53 +0000 |
parents | 7c77b2896ac2 |
children |
line wrap: on
line diff
--- a/test-data/NC_004668_137848_164286_icescreen.gb Sat Apr 02 21:05:10 2022 +0000 +++ b/test-data/NC_004668_137848_164286_icescreen.gb Tue Dec 06 10:40:53 2022 +0000 @@ -607,8 +607,8 @@ YLTVKKSLYYKNAQTYELVSPKTRASIRTIYLDEDTVHYLRDWKKRQDDVGGIEFILSY NSVPTQKHTVRHIIKRHAKLAEVHDIRIHALRHSHASLLISMGTNALLIKERLGHEDVQ TTLGTYGHLYPSSSTEIANELKGIVNVEFTNQNMASEVTNQFTKGVKK" - CDS 1..1511 - /origid="WP_002359295.1" + CDS 1..1512 + /origid="EF_RS00630" /function="Coupling Protein" /protein_id="WP_002359295.1" /locus_tag="EF_RS00630" @@ -616,11 +616,11 @@ /color=6 /note="ICEscreen prediction: Coupling protein; BlastP result (Annotation confidence: HIGH): Coupling protein TcpA - [Hit with AAO80014; Identity:100.00%; E-value:0; Query - coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM - profile; E-value:0; i-Evalue:0]" - CDS 3098..4380 - /origid="WP_002359299.1" + [Hit with AAO80014; Identity:100.00%; E-value:0.00e+00; + Query coverage:100.00%]; Hmmscan result: TcpA [Hit with + tcpA HMM profile; E-value:7.00e-94; i-Evalue:8.80e-94]" + CDS 3098..4381 + /origid="EF_RS00650" /function="Relaxase" /protein_id="WP_002359299.1" /locus_tag="EF_RS00650" @@ -628,11 +628,11 @@ /color=7 /note="ICEscreen prediction: Relaxase; BlastP result (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit - with AAO80018; Identity:99.77%; E-value:0; Query + with AAO80018; Identity:99.77%; E-value:0.00e+00; Query coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT - HMM profile; E-value:0; i-Evalue:0]" - CDS 17920..20426 - /origid="WP_002359320.1" + HMM profile; E-value:3.00e-128; i-Evalue:3.40e-128]" + CDS 17920..20427 + /origid="EF_RS00720" /function="VirB4" /protein_id="WP_002359320.1" /locus_tag="EF_RS00720" @@ -640,11 +640,11 @@ /color="184 134 11" /note="ICEscreen prediction: VirB4; BlastP result (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; - Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan - result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0; - i-Evalue:0]" - CDS 25273..26438 - /origid="WP_002392915.1" + Identity:41.15%; E-value:0.00e+00; Query coverage:99.76%]; + Hmmscan result: VirB4 [Hit with T4SS_virb4 HMM profile; + E-value:1.80e-28; i-Evalue:2.40e-28]" + CDS 25273..26439 + /origid="EF_RS00760" /function="Tyrosine Integrase" /protein_id="WP_002392915.1" /locus_tag="EF_RS00760" @@ -652,16 +652,17 @@ /color=8 /note="ICEscreen prediction: Tyrosine integrase; BlastP result (Annotation confidence: HIGH): Tyrosine integrase - [Hit with AAO80040; Identity:100.00%; E-value:0; Query - coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit - with Phage_integrase HMM profile; E-value:0; i-Evalue:0]" + [Hit with AAO80040; Identity:100.00%; E-value:0.00e+00; + Query coverage:100.00%]; Hmmscan result: Tyrosine integrase + [Hit with Phage_integrase HMM profile; E-value:4.40e-29; + i-Evalue:9.70e-29]" mobile_element 1..26439 /mobile_element_type="other: integrative and conjugative element" - /note="ICEscreen prediction: Putative ICE (one integrase - + /note="ICEscreen prediction: Putative ICE (one integrase Tyr) [Element structure: Single; ICE superfamily: Tn916; - ICE family: ICESt3; Relaxase family: MOBT; Coupling protein - family: TcpA] (ICEscreen ID: 2)" + ICE family: ICESt3; Relaxase family: - (MOBT); Coupling + protein family: TcpA] (ICEscreen ID: ID_1)" /color=15 ORIGIN 1 atgttaaaaa aattatttag atatagagga aggcgtattc gttattcttc aagaaacctg