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comparison test-data/NC_004668_137848_164286_detected_ME.summary @ 0:7c77b2896ac2 draft

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"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author iuc
date Tue, 04 Jan 2022 10:52:42 +0000
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children 2bb38197ff75
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-1:000000000000 0:7c77b2896ac2
1 ##################### Mobile elements detection statistics #####################
2 # Number of complete elements
3 Complete ICE (4 types of SP): 1
4 Complete IME (R+I, R+C+I): 0
5
6 # Number of complete modules
7 Conjugation module (R+C+V): 0
8 Mobilizable element (R+C with size <= 10 CDS): 0
9
10 # Number of partial elements
11 Partial ICE (at least V): 0
12 Other partial element (R+C, R+V, V+C with size > 10 CDS): 0
13
14 # Composite elements
15 Total nested elements (partial or complete): 0
16 Host element: 0
17 Guest element: 0
18 Element that are both host and guest: 0
19
20 ################### Signature proteins detection statistics ####################
21 # Total SP detected
22 Total SP: 4
23 Total Integrase: 1
24 Total Relaxase: 1
25 Total Coupling protein: 1
26 Total VirB4: 1
27
28 # Unassigned SP
29 Unassigned SP: 0
30 Unassigned Integrase: 0
31 Unassigned Relaxase: 0
32 Unassigned Coupling protein: 0
33 Unassigned VirB4: 0
34
35 ############################# Segments statistics ##############################
36 Number of segments: 1
37 Segment with one element: 1
38 Segment with several elements: 0
39 Segment with nested elements: 0
40 Segment with no element: 0
41
42 ############################### Parameters used ################################
43 Maximum CDS numbers in initial segments: 100
44 Maximum CDS numbers in an IME element: 10