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comparison test-data/NC_004668_137848_164286_icescreen.embl @ 0:7c77b2896ac2 draft

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"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author iuc
date Tue, 04 Jan 2022 10:52:42 +0000
parents
children 2bb38197ff75
comparison
equal deleted inserted replaced
-1:000000000000 0:7c77b2896ac2
1 ID NC_004668; SV 1; ; DNA; ; UNC; 0 BP.
2 XX
3 AC NC_004668;
4 XX
5 PR Project:PRJNA224116;
6 XX
7 DE Enterococcus faecalis V583, complete sequence
8 XX
9 OS .
10 OC .
11 XX
12 FH Key Location/Qualifiers
13 FH
14 FT CDS 1..1511
15 FT /origid="WP_002359295.1"
16 FT /function="Coupling Protein"
17 FT /protein_id="WP_002359295.1"
18 FT /locus_tag="EF_RS00630"
19 FT /codon_start=1
20 FT /color=6
21 FT /note="ICEscreen prediction: Coupling protein; BlastP
22 FT result (Annotation confidence: HIGH): Coupling protein TcpA
23 FT [Hit with AAO80014; Identity:100.00%; E-value:0; Query
24 FT coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM
25 FT profile; E-value:0; i-Evalue:0]"
26 FT CDS 3098..4380
27 FT /origid="WP_002359299.1"
28 FT /function="Relaxase"
29 FT /protein_id="WP_002359299.1"
30 FT /locus_tag="EF_RS00650"
31 FT /codon_start=1
32 FT /color=7
33 FT /note="ICEscreen prediction: Relaxase; BlastP result
34 FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
35 FT with AAO80018; Identity:99.77%; E-value:0; Query
36 FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
37 FT HMM profile; E-value:0; i-Evalue:0]"
38 FT CDS 17920..20426
39 FT /origid="WP_002359320.1"
40 FT /function="VirB4"
41 FT /protein_id="WP_002359320.1"
42 FT /locus_tag="EF_RS00720"
43 FT /codon_start=1
44 FT /color="184 134 11"
45 FT /note="ICEscreen prediction: VirB4; BlastP result
46 FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
47 FT Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan
48 FT result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0;
49 FT i-Evalue:0]"
50 FT CDS 25273..26438
51 FT /origid="WP_002392915.1"
52 FT /function="Tyrosine Integrase"
53 FT /protein_id="WP_002392915.1"
54 FT /locus_tag="EF_RS00760"
55 FT /codon_start=1
56 FT /color=8
57 FT /note="ICEscreen prediction: Tyrosine integrase; BlastP
58 FT result (Annotation confidence: HIGH): Tyrosine integrase
59 FT [Hit with AAO80040; Identity:100.00%; E-value:0; Query
60 FT coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit
61 FT with Phage_integrase HMM profile; E-value:0; i-Evalue:0]"
62 FT mobile_element 1..26439
63 FT /mobile_element_type="other: integrative and conjugative
64 FT element"
65 FT /note="ICEscreen prediction: Putative ICE (one integrase -
66 FT Tyr) [Element structure: Single; ICE superfamily: Tn916;
67 FT ICE family: ICESt3; Relaxase family: MOBT; Coupling protein
68 FT family: TcpA] (ICEscreen ID: 2)"
69 FT /color=15
70 XX
71 SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;
72 //