Mercurial > repos > iuc > icescreen
diff test-data/NC_004668_137848_164286_icescreen.embl @ 0:7c77b2896ac2 draft
"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author | iuc |
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date | Tue, 04 Jan 2022 10:52:42 +0000 |
parents | |
children | 2bb38197ff75 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/NC_004668_137848_164286_icescreen.embl Tue Jan 04 10:52:42 2022 +0000 @@ -0,0 +1,72 @@ +ID NC_004668; SV 1; ; DNA; ; UNC; 0 BP. +XX +AC NC_004668; +XX +PR Project:PRJNA224116; +XX +DE Enterococcus faecalis V583, complete sequence +XX +OS . +OC . +XX +FH Key Location/Qualifiers +FH +FT CDS 1..1511 +FT /origid="WP_002359295.1" +FT /function="Coupling Protein" +FT /protein_id="WP_002359295.1" +FT /locus_tag="EF_RS00630" +FT /codon_start=1 +FT /color=6 +FT /note="ICEscreen prediction: Coupling protein; BlastP +FT result (Annotation confidence: HIGH): Coupling protein TcpA +FT [Hit with AAO80014; Identity:100.00%; E-value:0; Query +FT coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM +FT profile; E-value:0; i-Evalue:0]" +FT CDS 3098..4380 +FT /origid="WP_002359299.1" +FT /function="Relaxase" +FT /protein_id="WP_002359299.1" +FT /locus_tag="EF_RS00650" +FT /codon_start=1 +FT /color=7 +FT /note="ICEscreen prediction: Relaxase; BlastP result +FT (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit +FT with AAO80018; Identity:99.77%; E-value:0; Query +FT coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT +FT HMM profile; E-value:0; i-Evalue:0]" +FT CDS 17920..20426 +FT /origid="WP_002359320.1" +FT /function="VirB4" +FT /protein_id="WP_002359320.1" +FT /locus_tag="EF_RS00720" +FT /codon_start=1 +FT /color="184 134 11" +FT /note="ICEscreen prediction: VirB4; BlastP result +FT (Annotation confidence: HIGH): VirB4 [Hit with CAE52368; +FT Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan +FT result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0; +FT i-Evalue:0]" +FT CDS 25273..26438 +FT /origid="WP_002392915.1" +FT /function="Tyrosine Integrase" +FT /protein_id="WP_002392915.1" +FT /locus_tag="EF_RS00760" +FT /codon_start=1 +FT /color=8 +FT /note="ICEscreen prediction: Tyrosine integrase; BlastP +FT result (Annotation confidence: HIGH): Tyrosine integrase +FT [Hit with AAO80040; Identity:100.00%; E-value:0; Query +FT coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit +FT with Phage_integrase HMM profile; E-value:0; i-Evalue:0]" +FT mobile_element 1..26439 +FT /mobile_element_type="other: integrative and conjugative +FT element" +FT /note="ICEscreen prediction: Putative ICE (one integrase - +FT Tyr) [Element structure: Single; ICE superfamily: Tn916; +FT ICE family: ICESt3; Relaxase family: MOBT; Coupling protein +FT family: TcpA] (ICEscreen ID: 2)" +FT /color=15 +XX +SQ Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other; +//