diff test-data/NC_004668_137848_164286_icescreen.embl @ 0:7c77b2896ac2 draft

"planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit e77a58fd03abe136aca7b79db16be4644520bb64"
author iuc
date Tue, 04 Jan 2022 10:52:42 +0000
parents
children 2bb38197ff75
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NC_004668_137848_164286_icescreen.embl	Tue Jan 04 10:52:42 2022 +0000
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+ID   NC_004668; SV 1; ; DNA; ; UNC; 0 BP.
+XX
+AC   NC_004668;
+XX
+PR   Project:PRJNA224116;
+XX
+DE   Enterococcus faecalis V583, complete sequence
+XX
+OS   .
+OC   .
+XX
+FH   Key             Location/Qualifiers
+FH
+FT   CDS             1..1511
+FT                   /origid="WP_002359295.1"
+FT                   /function="Coupling Protein"
+FT                   /protein_id="WP_002359295.1"
+FT                   /locus_tag="EF_RS00630"
+FT                   /codon_start=1
+FT                   /color=6
+FT                   /note="ICEscreen prediction: Coupling protein; BlastP
+FT                   result (Annotation confidence: HIGH): Coupling protein TcpA
+FT                   [Hit with AAO80014; Identity:100.00%; E-value:0; Query
+FT                   coverage:100.00%]; Hmmscan result: TcpA [Hit with tcpA HMM
+FT                   profile; E-value:0; i-Evalue:0]"
+FT   CDS             3098..4380
+FT                   /origid="WP_002359299.1"
+FT                   /function="Relaxase"
+FT                   /protein_id="WP_002359299.1"
+FT                   /locus_tag="EF_RS00650"
+FT                   /codon_start=1
+FT                   /color=7
+FT                   /note="ICEscreen prediction: Relaxase; BlastP result
+FT                   (Annotation confidence: HIGH): Relaxase MOBT (PF02486) [Hit
+FT                   with AAO80018; Identity:99.77%; E-value:0; Query
+FT                   coverage:95.53%]; Hmmscan result: MOBT [Hit with T4SS_MOBT
+FT                   HMM profile; E-value:0; i-Evalue:0]"
+FT   CDS             17920..20426
+FT                   /origid="WP_002359320.1"
+FT                   /function="VirB4"
+FT                   /protein_id="WP_002359320.1"
+FT                   /locus_tag="EF_RS00720"
+FT                   /codon_start=1
+FT                   /color="184 134 11"
+FT                   /note="ICEscreen prediction: VirB4; BlastP result
+FT                   (Annotation confidence: HIGH): VirB4 [Hit with CAE52368;
+FT                   Identity:41.15%; E-value:0; Query coverage:99.76%]; Hmmscan
+FT                   result: VirB4 [Hit with T4SS_virb4 HMM profile; E-value:0;
+FT                   i-Evalue:0]"
+FT   CDS             25273..26438
+FT                   /origid="WP_002392915.1"
+FT                   /function="Tyrosine Integrase"
+FT                   /protein_id="WP_002392915.1"
+FT                   /locus_tag="EF_RS00760"
+FT                   /codon_start=1
+FT                   /color=8
+FT                   /note="ICEscreen prediction: Tyrosine integrase; BlastP
+FT                   result (Annotation confidence: HIGH): Tyrosine integrase
+FT                   [Hit with AAO80040; Identity:100.00%; E-value:0; Query
+FT                   coverage:100.00%]; Hmmscan result: Tyrosine integrase [Hit
+FT                   with Phage_integrase HMM profile; E-value:0; i-Evalue:0]"
+FT   mobile_element  1..26439
+FT                   /mobile_element_type="other: integrative and conjugative
+FT                   element"
+FT                   /note="ICEscreen prediction: Putative ICE (one integrase -
+FT                   Tyr) [Element structure: Single; ICE superfamily: Tn916;
+FT                   ICE family: ICESt3; Relaxase family: MOBT; Coupling protein
+FT                   family: TcpA] (ICEscreen ID: 2)"
+FT                   /color=15
+XX
+SQ   Sequence 0 BP; 0 A; 0 C; 0 G; 0 T; 0 other;
+//