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view test-data/NC_004668_137848_164286_detected_ME.tsv @ 5:28e82853c217 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 0460711184f579a316f4393e4cd0663886295d48
author iuc
date Thu, 27 Apr 2023 11:33:28 +0000
parents 2bb38197ff75
children d45c95f382d3
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ICE_IME_id	Segment_number	Genome_accession	Category_of_element	Category_of_integrase	Host_ICE_IME_ids	Guest_ICE_IME_ids	Colocalized_ICE_IME_ids	ICEline_format	ICE_consensus_superfamily_SP_conj_module	ICE_consensus_family_SP_conj_module	IME_relaxase_family_domains_blast	HMM_family_SP_conj_module	Integrase_upstream	Integrase_downstream	Relaxase	Coupling_protein	VirB4	List_SP_ordered_genomic_position	Other_potential_SP_conj_module_need_manual_curation_and_review	Other_potential_integrase_need_manual_curation_and_review	Comments_regarding_structure
ID_1	1	NC_004668.1	Complete ICE (C+R+V+I)	one integrase Tyr	-	-	-	C3.R1:V7.I	Tn916	ICESt3	-	C:TcpA, R:MOBT, V:VirB4	-	EF_RS00760	EF_RS00650	EF_RS00630	EF_RS00720	EF_RS00630, EF_RS00650, EF_RS00720, EF_RS00760	-	-	Downstream integrase EF_RS00760 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity.