Mercurial > repos > iuc > icescreen
view test-data/NC_013798_298468_322494_NC_020450_643089_661957_detected_ME.summary @ 5:28e82853c217 draft
planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit 0460711184f579a316f4393e4cd0663886295d48
| author | iuc |
|---|---|
| date | Thu, 27 Apr 2023 11:33:28 +0000 |
| parents | c5f7c311f1b0 |
| children |
line wrap: on
line source
##################### Main parameters of the ICEscreen analysis ##################### Maximum distance in CDS between consecutive SPs within a segments: 100 Maximum distance in CDS between consecutive SPs within an IME element: 14 ##################### ICEscreen statistics for genome accession NC_013798.1 ##################### ##### Mobile elements ##### ## Number of complete elements Complete ICE (4 types of SP): 1 Complete IME (R+I, R+C+I with distance between consecutive SPs <= 14 CDSs): 0 ## Number of complete modules Conjugation module (R+C+V): 0 Mobilizable element (R+C with distance between consecutive SPs <= 14 CDS): 0 ## Number of partial elements Partial ICE (at least V): 0 Other partial element (R+C, R+V, V+C with distance between consecutive SPs > 14 CDS): 0 ## Composite elements Total nested elements (partial or complete): 0 Host element: 0 Guest element: 0 Element that are both host and guest: 0 ##### Signature proteins (SPs) ##### ## Total SPs detected Total SPs: 4 Total Integrase: 1 Total Relaxase: 1 Total Coupling protein: 1 Total VirB4: 1 Fragmented SPs: 0 ## Unassigned SPs Unassigned SPs: 0 Unassigned Integrase: 0 Unassigned Relaxase: 0 Unassigned Coupling protein: 0 Unassigned VirB4: 0 ##### Segments ##### Number of segments with one element: 1 Number of segments with several elements: 0 Number of segments with nested elements: 0 Number of segments with exclusively isolated SPs to manually verify: 0 ##################### ICEscreen statistics for genome accession NC_020450.1 ##################### ##### Mobile elements ##### ## Number of complete elements Complete ICE (4 types of SP): 1 Complete IME (R+I, R+C+I with distance between consecutive SPs <= 14 CDSs): 0 ## Number of complete modules Conjugation module (R+C+V): 0 Mobilizable element (R+C with distance between consecutive SPs <= 14 CDS): 0 ## Number of partial elements Partial ICE (at least V): 0 Other partial element (R+C, R+V, V+C with distance between consecutive SPs > 14 CDS): 0 ## Composite elements Total nested elements (partial or complete): 0 Host element: 0 Guest element: 0 Element that are both host and guest: 0 ##### Signature proteins (SPs) ##### ## Total SPs detected Total SPs: 4 Total Integrase: 1 Total Relaxase: 1 Total Coupling protein: 1 Total VirB4: 1 Fragmented SPs: 0 ## Unassigned SPs Unassigned SPs: 0 Unassigned Integrase: 0 Unassigned Relaxase: 0 Unassigned Coupling protein: 0 Unassigned VirB4: 0 ##### Segments ##### Number of segments with one element: 1 Number of segments with several elements: 0 Number of segments with nested elements: 0 Number of segments with exclusively isolated SPs to manually verify: 0