view test-data/NC_013798_298468_322494_NC_020450_643089_661957_detected_ME.tsv @ 4:c5f7c311f1b0 draft

planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit a9bc15365abc70c0367d732b790763d8fa53b220
author iuc
date Tue, 28 Feb 2023 14:10:38 +0000
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children d45c95f382d3
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ICE_IME_id	Segment_number	Genome_accession	Category_of_element	Category_of_integrase	Host_ICE_IME_ids	Guest_ICE_IME_ids	Colocalized_ICE_IME_ids	ICEline_format	ICE_consensus_superfamily_SP_conj_module	ICE_consensus_family_SP_conj_module	IME_relaxase_family_domains_blast	HMM_family_SP_conj_module	Integrase_upstream	Integrase_downstream	Relaxase	Coupling_protein	VirB4	List_SP_ordered_genomic_position	Other_potential_SP_conj_module_need_manual_curation_and_review	Other_potential_integrase_need_manual_curation_and_review	Comments_regarding_structure
ID_1	1	NC_013798.1	Complete ICE (V+C+R+D)	one integrase DDE	-	-	-	V8.C7.R2.D	Tn5252	TnGBS2	-	C:VirD4, R:MOBP, V:VirB4	-	GALLO_RS01755	GALLO_RS01740	GALLO_RS01695	GALLO_RS01650	GALLO_RS01650, GALLO_RS01695, GALLO_RS01740, GALLO_RS01755	-	-	Downstream integrase GALLO_RS01755 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity. 
ID_2	2	NC_020450.1	Complete ICE (C+R+V+I)	one integrase Tyr	-	-	-	C1.R1:V5.I	Tn916	-	-	C:TcpA, R:MOBT, V:VirB4	-	LILO_RS03350	LILO_RS03260	LILO_RS03250	LILO_RS03320	LILO_RS03250, LILO_RS03260, LILO_RS03320, LILO_RS03350	-	-	Downstream integrase LILO_RS03350 has been associated to the structure ID_2 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity.