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annotate test-data/NC_013798_298468_322494_NC_020450_643089_661957_detected_ME.tsv @ 4:c5f7c311f1b0 draft

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planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit a9bc15365abc70c0367d732b790763d8fa53b220
author iuc
date Tue, 28 Feb 2023 14:10:38 +0000
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children d45c95f382d3
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c5f7c311f1b0 planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit a9bc15365abc70c0367d732b790763d8fa53b220
iuc
parents:
diff changeset
1 ICE_IME_id Segment_number Genome_accession Category_of_element Category_of_integrase Host_ICE_IME_ids Guest_ICE_IME_ids Colocalized_ICE_IME_ids ICEline_format ICE_consensus_superfamily_SP_conj_module ICE_consensus_family_SP_conj_module IME_relaxase_family_domains_blast HMM_family_SP_conj_module Integrase_upstream Integrase_downstream Relaxase Coupling_protein VirB4 List_SP_ordered_genomic_position Other_potential_SP_conj_module_need_manual_curation_and_review Other_potential_integrase_need_manual_curation_and_review Comments_regarding_structure
c5f7c311f1b0 planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit a9bc15365abc70c0367d732b790763d8fa53b220
iuc
parents:
diff changeset
2 ID_1 1 NC_013798.1 Complete ICE (V+C+R+D) one integrase DDE - - - V8.C7.R2.D Tn5252 TnGBS2 - C:VirD4, R:MOBP, V:VirB4 - GALLO_RS01755 GALLO_RS01740 GALLO_RS01695 GALLO_RS01650 GALLO_RS01650, GALLO_RS01695, GALLO_RS01740, GALLO_RS01755 - - Downstream integrase GALLO_RS01755 has been associated to the structure ID_1 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity.
c5f7c311f1b0 planemo upload for repository https://forgemia.inra.fr/ices_imes_analysis/icescreen commit a9bc15365abc70c0367d732b790763d8fa53b220
iuc
parents:
diff changeset
3 ID_2 2 NC_020450.1 Complete ICE (C+R+V+I) one integrase Tyr - - - C1.R1:V5.I Tn916 - - C:TcpA, R:MOBT, V:VirB4 - LILO_RS03350 LILO_RS03260 LILO_RS03250 LILO_RS03320 LILO_RS03250, LILO_RS03260, LILO_RS03320, LILO_RS03350 - - Downstream integrase LILO_RS03350 has been associated to the structure ID_2 pre-merging because it is adjacent to the conj module and there is no upstream/downstream ambiguity.