Mercurial > repos > iuc > idr_download_by_ids

comparison idr_download_by_ids.xml @ 1:9340cbc7796c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download commit c496b34c7f6265cccd9326fd239542d9e625c1a4"
author iuc
date Tue, 24 Mar 2020 13:48:46 -0400
parents 57aa9597cd31
children 17b1cd0f4812
comparison
equal deleted inserted replaced
0:57aa9597cd31 1:9340cbc7796c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="idr_download_by_ids" name="IDR Download" version="0.9" profile="18.09"> 2 <tool id="idr_download_by_ids" name="IDR Download" version="0.10" profile="18.09">
3 <description>- download images from the Image Data Resource using image IDs</description> 3 <description>- download images from the Image Data Resource using image IDs</description>
4 <macros> 4 <macros>
5 <xml name="region_spec" token_pos="upper-left corner"> 5 <xml name="region_spec" token_pos="upper-left corner">
6 <param name="x_coord" type="integer" value="0" min="0" 6 <param name="x_coord" type="integer" value="0" min="0"
7 label="x-coordinate of region @POS@" /> 7 label="x-coordinate of region @POS@" />
105 <param name="width" value="5" /> 105 <param name="width" value="5" />
106 <param name="height" value="5" /> 106 <param name="height" value="5" />
107 </conditional> 107 </conditional>
108 <param name="frame" value="2" /> 108 <param name="frame" value="2" />
109 <output_collection name="output_file" type="list"> 109 <output_collection name="output_file" type="list">
110 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/> 110 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
111 </output_collection> 111 </output_collection>
112 </test> 112 </test>
113 <test> 113 <test>
114 <param name="source" value="link" /> 114 <param name="source" value="link" />
115 <param name="id_spec" value="1884807" /> 115 <param name="id_spec" value="1884807" />
121 <param name="width" value="5" /> 121 <param name="width" value="5" />
122 <param name="height" value="5" /> 122 <param name="height" value="5" />
123 </conditional> 123 </conditional>
124 <param name="frame" value="2" /> 124 <param name="frame" value="2" />
125 <output_collection name="output_file" type="list"> 125 <output_collection name="output_file" type="list">
126 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/> 126 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
127 </output_collection> 127 </output_collection>
128 </test> 128 </test>
129 <test> 129 <test>
130 <param name="source" value="link" /> 130 <param name="source" value="link" />
131 <param name="id_spec" value="1884807" /> 131 <param name="id_spec" value="1884807" />
137 <param name="width" value="5" /> 137 <param name="width" value="5" />
138 <param name="height" value="5" /> 138 <param name="height" value="5" />
139 </conditional> 139 </conditional>
140 <param name="frame" value="2" /> 140 <param name="frame" value="2" />
141 <output_collection name="output_file" type="list"> 141 <output_collection name="output_file" type="list">
142 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/> 142 <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
143 </output_collection> 143 </output_collection>
144 </test> 144 </test>
145 <test> 145 <test>
146 <param name="source" value="link" /> 146 <param name="source" value="link" />
147 <param name="id_spec" value="https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711" /> 147 <param name="id_spec" value="https://idr.openmicroscopy.org/webclient/?show=image-9036708|image-9036710|image-9036711" />
150 <conditional name="clip_image"> 150 <conditional name="clip_image">
151 <param name="select" value="" /> 151 <param name="select" value="" />
152 </conditional> 152 </conditional>
153 <param name="frame" value="20" /> 153 <param name="frame" value="20" />
154 <output_collection name="output_file" type="list" count="3"> 154 <output_collection name="output_file" type="list" count="3">
155 <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024"> 155 <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
156 <assert_contents> 156 <assert_contents>
157 <has_size value="4194510" /> 157 <has_size value="4194510" />
158 </assert_contents> 158 </assert_contents>
159 </element> 159 </element>
160 </output_collection> 160 </output_collection>
187 <param name="select" value="" /> 187 <param name="select" value="" />
188 </conditional> 188 </conditional>
189 <param name="frame" value="20" /> 189 <param name="frame" value="20" />
190 <param name="skip_failed" value="true" /> 190 <param name="skip_failed" value="true" />
191 <output_collection name="output_file" type="list" count="2"> 191 <output_collection name="output_file" type="list" count="2">
192 <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024"> 192 <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
193 <assert_contents> 193 <assert_contents>
194 <has_size value="4194510" /> 194 <has_size value="4194510" />
195 </assert_contents> 195 </assert_contents>
196 </element> 196 </element>
197 </output_collection> 197 </output_collection>