Mercurial > repos > iuc > idr_download_by_ids

changeset 1:9340cbc7796c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idr_download commit c496b34c7f6265cccd9326fd239542d9e625c1a4"
author iuc
date Tue, 24 Mar 2020 13:48:46 -0400
parents 57aa9597cd31
children 17b1cd0f4812
files idr_download_by_ids.py idr_download_by_ids.xml
diffstat 2 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/idr_download_by_ids.py	Sat Feb 08 13:24:39 2020 -0500
+++ b/idr_download_by_ids.py	Tue Mar 24 13:48:46 2020 -0400
@@ -189,7 +189,7 @@
                     )
 
             # download and save the region as TIFF
-            fname = '_'.join(
+            fname = '__'.join(
                 [image_name, str(image_id)] + [str(x) for x in tile]
             )
             download_plane_as_tiff(image, tile, z_stack, channel_index, frame, fname)
--- a/idr_download_by_ids.xml	Sat Feb 08 13:24:39 2020 -0500
+++ b/idr_download_by_ids.xml	Tue Mar 24 13:48:46 2020 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="idr_download_by_ids" name="IDR Download" version="0.9" profile="18.09">
+<tool id="idr_download_by_ids" name="IDR Download" version="0.10" profile="18.09">
     <description>- download images from the Image Data Resource using image IDs</description>
     <macros>
         <xml name="region_spec" token_pos="upper-left corner">
@@ -107,7 +107,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -123,7 +123,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -139,7 +139,7 @@
             </conditional>
             <param name="frame" value="2" />
             <output_collection name="output_file" type="list">
-                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ_1884807_3_3_5_5" file="test1.tiff"/>
+                <element name="Centrin_PCNT_Cep215_20110506_Fri-1545_0_SIR_PRJ__1884807__3__3__5__5" file="test1.tiff"/>
             </output_collection>
         </test>
         <test>
@@ -152,7 +152,7 @@
             </conditional>
             <param name="frame" value="20" />
             <output_collection name="output_file" type="list" count="3">
-                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024">
+                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                     <assert_contents>
                         <has_size value="4194510" />
                     </assert_contents>
@@ -189,7 +189,7 @@
             <param name="frame" value="20" />
             <param name="skip_failed" value="true" />
             <output_collection name="output_file" type="list" count="2">
-                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D_9036711_0_0_1024_1024">
+                <element name="171101_LeadingEdgeDeletionPSMMovies01_15_R3D__9036711__0__0__1024__1024">
                     <assert_contents>
                         <has_size value="4194510" />
                     </assert_contents>