Mercurial > repos > iuc > iedb_api
changeset 1:6cf84410cb2e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/iedb_api commit 848c47fb29e9f1d319056a94a7dbd90129a4aafc"
| author | iuc |
|---|---|
| date | Tue, 07 Apr 2020 23:20:35 -0400 |
| parents | fe3c43451319 |
| children | a09849898387 |
| files | iedb_api.py |
| diffstat | 1 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/iedb_api.py Fri Feb 28 18:09:34 2020 -0500 +++ b/iedb_api.py Tue Apr 07 23:20:35 2020 -0400 @@ -27,8 +27,7 @@ 'processing': processing_methods, 'mhcnp': mhcnp_methods, 'bcell': bcell_methods} -all_methods = set(mhci_methods + mhcii_methods + - mhcnp_methods + bcell_methods) +all_methods = set(mhci_methods + mhcii_methods + mhcnp_methods + bcell_methods) prediction_lengths = {'mhci': range(8, 16), 'mhcii': range(11, 31), 'processing': range(8, 15), @@ -158,7 +157,7 @@ parser.add_argument('-l', '--length', action="append", default=[], - help='lengths for which to make predictions, ' + + help='lengths for which to make predictions, ' '1 per allele') parser.add_argument('-w', '--window_size', type=int, @@ -166,7 +165,7 @@ help='window_size for bcell prediction') parser.add_argument('-i', '--input', default=None, - help='Input file for peptide sequences ' + + help='Input file for peptide sequences ' '(fasta or tabular)') parser.add_argument('-c', '--column', default=None, @@ -205,7 +204,7 @@ warn_err('-a allele or -A allelefile required\n', exit_code=1) if not (args.sequence or args.input): - warn_err('NO Sequences given: ' + + warn_err('NO Sequences given: ' 'either -s sequence or -i input_file is required\n', exit_code=1)