Mercurial > repos > iuc > integron_finder

comparison test-data/test2_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
comparison
equal deleted inserted replaced
2:392f100eebcd 3:bfd290fe1588
1 # cmd: integron_finder /tmp/tmpx8hgxvv4/files/9/c/7/dataset_9c7b9167-33f0-4cb0-8bad-0edb132a2f75.dat --cpu 1 --keep-tmp --local-max --linear -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 1 # integron_finder 2.0.5
2 # cmd: integron_finder /tmp/tmphy8ici_1/files/8/1/3/dataset_8137b4e1-31db-4985-96ff-fe68cc586a9d.dat --cpu 1 --keep-tmp --local-max --linear -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology 3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
3 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI In0 No NA lin 4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI complete No NA lin
5 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_2 905 1609 -1 NA protein protein NA complete No NA lin
6 integron_01 ACBA.007.P01_13 attc_001 1453 1504 1 0.31 attC attC attc_4 complete No NA lin
7 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_3 1722 2537 -1 NA protein protein NA complete No NA lin
8 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_4 2667 2900 1 NA protein protein NA complete No NA lin
9 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_5 2791 3495 -1 NA protein protein NA complete No NA lin
10 integron_01 ACBA.007.P01_13 attc_002 3339 3390 1 0.31 attC attC attc_4 complete No 1835.0 lin
11 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_6 3546 4313 1 NA protein protein NA complete No NA lin
4 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN No NA lin 12 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN No NA lin
5 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 5.1e-10 attC attC attc_4 CALIN No NA lin 13 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 5.1e-10 attC attC attc_4 CALIN No NA lin
6 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN No NA lin 14 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN No NA lin
7 integron_02 ACBA.007.P01_13 attc_002 18681 18749 -1 0.016 attC attC attc_4 CALIN No 797.0 lin 15 integron_02 ACBA.007.P01_13 attc_002 18681 18749 -1 0.016 attC attC attc_4 CALIN No 797.0 lin
8 integron_02 ACBA.007.P01_13 attc_003 19079 19149 -1 3.3e-05 attC attC attc_4 CALIN No 330.0 lin 16 integron_02 ACBA.007.P01_13 attc_003 19079 19149 -1 3.3e-05 attC attC attc_4 CALIN No 330.0 lin