Mercurial > repos > iuc > integron_finder

comparison test-data/test4_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
comparison
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2:392f100eebcd 3:bfd290fe1588
1 # cmd: integron_finder /tmp/tmpx8hgxvv4/files/0/6/1/dataset_061a0fee-1c9e-49b2-949c-3c47f53e6db1.dat --cpu 1 --keep-tmp --topology-file /tmp/tmpx8hgxvv4/files/4/e/0/dataset_4e02f977-0c6a-4062-89ef-148bf2871520.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 1 # integron_finder 2.0.5
2 # cmd: integron_finder /tmp/tmphy8ici_1/files/e/0/d/dataset_e0daeffa-7968-4ff7-babf-1f3f24a5c8f3.dat --cpu 1 --keep-tmp --topology-file /tmp/tmphy8ici_1/files/0/b/f/dataset_0bfb6d07-f1e7-4e45-ac12-719cf99e8532.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology 3 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
3 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI In0 Yes NA lin 4 integron_01 ACBA.007.P01_13 ACBA.007.P01_13_1 55 1014 1 1.9e-25 protein intI intersection_tyr_intI In0 Yes NA lin
4 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN Yes NA lin 5 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_20 17375 17722 -1 NA protein protein NA CALIN Yes NA lin
5 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA lin 6 integron_02 ACBA.007.P01_13 attc_001 17825 17884 -1 1e-09 attC attC attc_4 CALIN Yes NA lin
6 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN Yes NA lin 7 integron_02 ACBA.007.P01_13 ACBA.007.P01_13_21 17886 18665 -1 NA protein protein NA CALIN Yes NA lin