Mercurial > repos > iuc > integron_finder

diff test-data/test4_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
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--- a/test-data/test4_integrons_table.tsv	Sun Feb 25 16:08:08 2024 +0000
+++ b/test-data/test4_integrons_table.tsv	Fri Jun 14 21:19:29 2024 +0000
@@ -1,4 +1,5 @@
-# cmd: integron_finder /tmp/tmpx8hgxvv4/files/0/6/1/dataset_061a0fee-1c9e-49b2-949c-3c47f53e6db1.dat --cpu 1 --keep-tmp --topology-file /tmp/tmpx8hgxvv4/files/4/e/0/dataset_4e02f977-0c6a-4062-89ef-148bf2871520.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
+# integron_finder 2.0.5 
+# cmd: integron_finder /tmp/tmphy8ici_1/files/e/0/d/dataset_e0daeffa-7968-4ff7-babf-1f3f24a5c8f3.dat --cpu 1 --keep-tmp --topology-file /tmp/tmphy8ici_1/files/0/b/f/dataset_0bfb6d07-f1e7-4e45-ac12-719cf99e8532.dat -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
 ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
 integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	In0	Yes	NA	lin
 integron_02	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	CALIN	Yes	NA	lin