diff test-data/test2_integrons_table.tsv @ 3:bfd290fe1588 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
children
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--- a/test-data/test2_integrons_table.tsv	Sun Feb 25 16:08:08 2024 +0000
+++ b/test-data/test2_integrons_table.tsv	Fri Jun 14 21:19:29 2024 +0000
@@ -1,6 +1,14 @@
-# cmd: integron_finder /tmp/tmpx8hgxvv4/files/9/c/7/dataset_9c7b9167-33f0-4cb0-8bad-0edb132a2f75.dat --cpu 1 --keep-tmp --local-max --linear -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
+# integron_finder 2.0.5 
+# cmd: integron_finder /tmp/tmphy8ici_1/files/8/1/3/dataset_8137b4e1-31db-4985-96ff-fe68cc586a9d.dat --cpu 1 --keep-tmp --local-max --linear -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40
 ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
-integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	In0	No	NA	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_2	905	1609	-1	NA	protein	protein	NA	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	attc_001	1453	1504	1	0.31	attC	attC	attc_4	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_3	1722	2537	-1	NA	protein	protein	NA	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_4	2667	2900	1	NA	protein	protein	NA	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_5	2791	3495	-1	NA	protein	protein	NA	complete	No	NA	lin
+integron_01	ACBA.007.P01_13	attc_002	3339	3390	1	0.31	attC	attC	attc_4	complete	No	1835.0	lin
+integron_01	ACBA.007.P01_13	ACBA.007.P01_13_6	3546	4313	1	NA	protein	protein	NA	complete	No	NA	lin
 integron_02	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	CALIN	No	NA	lin
 integron_02	ACBA.007.P01_13	attc_001	17825	17884	-1	5.1e-10	attC	attC	attc_4	CALIN	No	NA	lin
 integron_02	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	NA	protein	protein	NA	CALIN	No	NA	lin