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view test-data/test7_integrons_table.tsv @ 1:4768f7f8e93f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit 04aa903b53ba0596d486d2ce4a1b4f1d7125846f
author iuc
date Fri, 17 Feb 2023 18:36:09 +0000
parents 1ae00120dd24
children 392f100eebcd
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# cmd: integron_finder /tmp/tmp3_ir6t5a/files/7/e/3/dataset_7e32f99d-dba8-4527-9e8f-4ac9ca88d7db.dat --cpu 1 --keep-tmp -dt 2000 --calin-threshold 3 --max-attc-size 188 --min-attc-size 30
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9000000000000001e-25	protein	intI	intersection_tyr_intI	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_001	17825	17884	-1	1e-09	attC	attC	attc_4	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_002	19080	19149	-1	0.0001	attC	attC	attc_4	complete	Yes	1196.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_22	19090	19749	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_003	19618	19726	-1	1.1e-07	attC	attC	attc_4	complete	Yes	469.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_23	19721	20254	-1	NA	protein	protein	NA	complete	Yes	NA	circ