Mercurial > repos > iuc > integron_finder
changeset 1:4768f7f8e93f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit 04aa903b53ba0596d486d2ce4a1b4f1d7125846f
| author | iuc |
|---|---|
| date | Fri, 17 Feb 2023 18:36:09 +0000 |
| parents | 1ae00120dd24 |
| children | 392f100eebcd |
| files | integron_finder.xml macro.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/integron_finder.xml Thu Sep 22 13:51:14 2022 +0000 +++ b/integron_finder.xml Fri Feb 17 18:36:09 2023 +0000 @@ -35,7 +35,9 @@ && mv Results_Integron_Finder_* Results_Integron_Finder ]]></command> <inputs> - <param type="data" name="sequence" format="fasta" label="Replicon file" help="Replicon can be entire chromosome, contif, PCR fragments..." /> + <param type="data" name="sequence" format="fasta" label="Replicon file" help="Replicon can be entire chromosome, contif, PCR fragments..."> + <validator type="expression" message="Integron Finder has problems with large multi FASTA files. Please assembly your sequences or split them up into files smaller 10.000 sequences."><![CDATA[value is not None and value.metadata.sequences <= 10000]]></validator> + </param> <param name="local_max" argument="--local-max" type="boolean" checked="false" truevalue="--local-max" falsevalue="" label="Thorough local detection" help="This option allows a more sensitive search. I will be slower (dependant on the number of hits) if integrons are found, but will be as fast if nothing is detected and will not increase the false positive rate." /> <param name="type_replicon" type="select" optional="true" label="Default replicons topology" help="Set the default topology for replicons, linear, circular (deault: no topology)"> <option value="--linear">linear (--linear)</option>
--- a/macro.xml Thu Sep 22 13:51:14 2022 +0000 +++ b/macro.xml Fri Feb 17 18:36:09 2023 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.0.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.05</token> <token name="@THREADS@">\${GALAXY_SLOTS:-2}</token> <xml name="requirements">