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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/integron_finder commit cbb56e087d23446b8159622e2e4b7a709c8529ad
author iuc
date Fri, 14 Jun 2024 21:19:29 +0000
parents 392f100eebcd
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# integron_finder 2.0.5 
# cmd: integron_finder /tmp/tmphy8ici_1/files/2/e/b/dataset_2ebb353a-12c6-4a70-b30a-5bd0ab3efdce.dat --cpu 1 --keep-tmp -dt 4000 --calin-threshold 2 --max-attc-size 200 --min-attc-size 40 --union-integrases --func-annot
ID_integron	ID_replicon	element	pos_beg	pos_end	strand	evalue	type_elt	annotation	model	type	default	distance_2attC	considered_topology
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_1	55	1014	1	1.9e-25	protein	intI	intersection_tyr_intI	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_20	17375	17722	-1	9.800000000000001e-65	protein	SMR_qac_E-NCBIFAM	NF000276.2	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_001	17825	17884	-1	1e-09	attC	attC	attc_4	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_21	17886	18665	-1	2.8e-183	protein	ANT_3pp_AadA1-NCBIFAM	NF033126.1	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_002	19080	19149	-1	0.0001	attC	attC	attc_4	complete	Yes	1196.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_22	19090	19749	-1	NA	protein	protein	NA	complete	Yes	NA	circ
integron_01	ACBA.007.P01_13	attc_003	19618	19726	-1	1.1e-07	attC	attC	attc_4	complete	Yes	469.0	circ
integron_01	ACBA.007.P01_13	ACBA.007.P01_13_23	19721	20254	-1	7.899999999999999e-69	protein	AAC_3_I-NCBIFAM	NF033083.0	complete	Yes	NA	circ