Mercurial > repos > iuc > ivar_removereads

comparison write_amplicon_info_file.py @ 10:ee29337f905c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea
author iuc
date Wed, 13 Jul 2022 15:20:33 +0000
parents 8d36959b000d
children
comparison
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9:8d36959b000d 10:ee29337f905c
8 8
9 9
10 def write_amplicon_info_file(bed_file, amplicon_info_file): 10 def write_amplicon_info_file(bed_file, amplicon_info_file):
11 amplicon_sets = {} 11 amplicon_sets = {}
12 for line in bed_file: 12 for line in bed_file:
13 fields = line.strip().split('\t') 13 line = line.strip()
14 if not line:
15 continue
16 fields = line.split('\t')
14 start = int(fields[1]) 17 start = int(fields[1])
15 name = fields[3] 18 name = fields[3]
16 re_match = AMPLICON_PAT.match(name) 19 re_match = AMPLICON_PAT.match(name)
17 if re_match is None: 20 if re_match is None:
18 raise ValueError( 21 raise ValueError(