Mercurial > repos > iuc > ivar_removereads

diff write_amplicon_info_file.py @ 10:ee29337f905c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ivar/ commit 8ce6fd9aee543d9e62db33a9c95f79d8dc4e6dea
author iuc
date Wed, 13 Jul 2022 15:20:33 +0000
parents 8d36959b000d
children
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--- a/write_amplicon_info_file.py	Fri Aug 20 20:34:11 2021 +0000
+++ b/write_amplicon_info_file.py	Wed Jul 13 15:20:33 2022 +0000
@@ -10,7 +10,10 @@
 def write_amplicon_info_file(bed_file, amplicon_info_file):
     amplicon_sets = {}
     for line in bed_file:
-        fields = line.strip().split('\t')
+        line = line.strip()
+        if not line:
+            continue
+        fields = line.split('\t')
         start = int(fields[1])
         name = fields[3]
         re_match = AMPLICON_PAT.match(name)