Mercurial > repos > iuc > jbrowse

annotate test-data/bam/test.xml @ 35:3235aeb45c22 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 22ed9cb1e65cff5239df7ad4c76eaf0e981cf279"
author iuc
date Wed, 18 Dec 2019 10:46:52 -0500
parents 9de82b4963e6
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
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1 <?xml version="1.0"?>
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2 <root>
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3 <metadata>
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4 <gencode>11</gencode>
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5 <genomes>
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6 <genome path="/tmp/tmpqkd9zdgq/files/d/3/d/dataset_d3d20b83-6a77-4e76-bb7e-3b9fe7261453.dat">
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7 <metadata>
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8 <dataset id="238993350abc9bfd" hid="1"
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9 size="171.6 KB"
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10 edam_format="format_1929"
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11 file_ext="fasta" />
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12 <history id="a90a30fafe298e1e"
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13 user_email="test@bx.psu.edu"
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14 user_id="2"
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15 display_name="test_history"/>
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16 <metadata
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17 dbkey="?"
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18 data_lines="2881"
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19 sequences="1"
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20 />
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21 <tool
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22 tool_id="upload1"
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23 tool_version="1.1.6"
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24 />
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25 </metadata>
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26 </genome>
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27 </genomes>
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28 <general>
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29 <defaultLocation></defaultLocation>
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30 <trackPadding>20</trackPadding>
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31
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32 <shareLink>true</shareLink>
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33 <aboutDescription></aboutDescription>
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34 <show_tracklist>true</show_tracklist>
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35 <show_nav>true</show_nav>
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36 <show_overview>true</show_overview>
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37 <show_menu>true</show_menu>
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38 <hideGenomeOptions>false</hideGenomeOptions>
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39 </general>
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40 <galaxyUrl>http://localhost</galaxyUrl>
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41 </metadata>
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42 <tracks>
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43 <track cat="Auto Coloured" format="pileup" visibility="default_off">
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44 <files>
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45 <trackFile path="/tmp/tmpqkd9zdgq/files/6/a/0/dataset_6a00d93a-ee34-42d5-897b-9470d6c71e1f.dat" ext="bam" label="merlin-sample.bam">
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46 <metadata>
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47 <dataset id="adba32ec9811aba7" hid="2"
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48 size="12.9 KB"
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49 edam_format="format_2572"
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50 file_ext="bam" />
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51 <history id="a90a30fafe298e1e"
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52 user_email="test@bx.psu.edu"
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53 user_id="2"
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54 display_name="test_history"/>
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55 <metadata
25
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56 dbkey="?"
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57 bam_version="1.3"
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58 sort_order="coordinate"
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59 reference_names="[SafeStringWrapper(unicode:__lt__class __sq__galaxy.tools.wrappers.ToolParameterValueWrapper__sq____gt__,__lt__class __sq__galaxy.util.object_wrapper.SafeStringWrapper__sq____gt__,__lt__class __sq__numbers.Number__sq____gt__,__lt__type __sq__NoneType__sq____gt__,__lt__type __sq__NotImplementedType__sq____gt__,__lt__type __sq__bool__sq____gt__,__lt__type __sq__bytearray__sq____gt__,__lt__type __sq__ellipsis__sq____gt__) object at 7f3deb10ba10 on: u__sq__Merlin__sq__]"
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60 reference_lengths="[172788]"
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61 columns="12"
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62 bam_index="__lt__galaxy.model.MetadataFile(1) at 0x7f3de95da7d0__gt__"
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63 />
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64 <tool
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65 tool_id="upload1"
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66 tool_version="1.1.6"
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67 />
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68 </metadata>
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69 </trackFile>
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70 </files>
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71
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72 <options>
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73 <custom_config>
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74 </custom_config>
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75
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76 <pileup>
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77 <auto_snp>false</auto_snp>
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78 <bam_indices>
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79 <bam_index>/tmp/tmpqkd9zdgq/files/_metadata_files/a/5/2/metadata_a520581b-e8cc-43e5-8514-3379cd5eaafb.dat</bam_index>
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80 </bam_indices>
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81 <chunkSizeLimit>5000000</chunkSizeLimit>
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82 </pileup>
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83 </options>
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84 </track>
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85 </tracks>
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86 <plugins
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87 ComboTrackSelector=""
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88 Bookmarks=""
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89 GCContent=""
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90 BlastView="True"
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91 theme=""
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92 />
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93 </root>