Mercurial > repos > iuc > jbrowse

comparison test-data/custom_config/test.xml @ 31:2bb2e07a7a21 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 12dff0abf006f6c81f6462cdf4ea9c0c740d1e9c
author iuc
date Mon, 15 Apr 2019 10:31:26 -0400
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children 9de82b4963e6
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30:ca2def38369c 31:2bb2e07a7a21
1 <?xml version="1.0"?>
2 <root>
3 <metadata>
4 <gencode>11</gencode>
5 <genomes>
6 <genome path="/tmp/tmpWtvfKr/files/000/dataset_17.dat">
7 <metadata>
8 <dataset id="27ee89e2e3d631e0" hid="1"
9 size="171.6 KB"
10 edam_format="format_1929"
11 file_ext="fasta" />
12 <history id="7b55dbb89df8f4e5"
13 user_email="test@bx.psu.edu"
14 user_id="2"
15 display_name="test_history"/>
16 <metadata
17 dbkey="?"
18 data_lines="2881"
19 sequences="1"
20 />
21 <tool
22 tool_id="upload1"
23 tool_version="1.1.6"
24 />
25 </metadata>
26 </genome>
27 </genomes>
28 <general>
29 <defaultLocation></defaultLocation>
30 <trackPadding>20</trackPadding>
31
32 <shareLink>true</shareLink>
33 <aboutDescription></aboutDescription>
34 <show_tracklist>true</show_tracklist>
35 <show_nav>true</show_nav>
36 <show_overview>true</show_overview>
37 <show_menu>true</show_menu>
38 <hideGenomeOptions>false</hideGenomeOptions>
39 </general>
40 <galaxyUrl>http://localhost</galaxyUrl>
41 </metadata>
42 <tracks>
43 <track cat="With custom track config" format="gene_calls" visibility="default_off">
44 <files>
45 <trackFile path="/tmp/tmpWtvfKr/files/000/dataset_18.dat" ext="gff3" label="1.gff">
46 <metadata>
47 <dataset id="61f03d5eef6f1538" hid="2"
48 size="2.3 KB"
49 edam_format="format_1975"
50 file_ext="gff3" />
51 <history id="7b55dbb89df8f4e5"
52 user_email="test@bx.psu.edu"
53 user_id="2"
54 display_name="test_history"/>
55 <metadata
56 dbkey="?"
57 data_lines="27"
58 comment_lines="19"
59 columns="9"
60 delimiter="__tc__"
61 attributes="6"
62 />
63 <tool
64 tool_id="upload1"
65 tool_version="1.1.6"
66 />
67 </metadata>
68 </trackFile>
69 </files>
70
71 <options>
72 <style>
73 <overridePlugins>False</overridePlugins>
74 <overrideDraggable>False</overrideDraggable>
75 <className>feature2</className>
76 <description>note,description</description>
77 <label>product,name,id</label>
78 <height>10px</height>
79 <maxHeight>600</maxHeight>
80 </style>
81 <scaling>
82 <method>ignore</method>
83 <scheme>
84 <color>__auto__</color>
85 </scheme>
86 </scaling>
87 <menus>
88 </menus>
89 <custom_config>
90 <displayMode>
91 <text>collapsed</text>
92 </displayMode>
93 <histograms.height>
94 <integer>150</integer>
95 </histograms.height>
96 <maxFeatureScreenDensity>
97 <float>0.1</float>
98 </maxFeatureScreenDensity>
99 <style.strandArrow>
100 <boolean>false</boolean>
101 </style.strandArrow>
102 </custom_config>
103
104 <gff>
105 <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
106 <topLevelFeatures>mRNA</topLevelFeatures>
107 <index>false</index>
108 </gff>
109 </options>
110 </track>
111 </tracks>
112 <plugins
113 ComboTrackSelector=""
114 Bookmarks=""
115 GCContent=""
116 BlastView="True"
117 theme=""
118 />
119 </root>