Mercurial > repos > iuc > jbrowse
diff jbrowse.xml @ 13:69c5e9c0add0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit bb4fe9cc4bc03918afa525569ed36144a819ce79
| author | iuc |
|---|---|
| date | Thu, 09 Feb 2017 12:36:16 -0500 |
| parents | db5fe5a3176a |
| children | b5c5470d7c09 |
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--- a/jbrowse.xml Mon Feb 06 12:52:09 2017 -0500 +++ b/jbrowse.xml Thu Feb 09 12:36:16 2017 -0500 @@ -227,6 +227,10 @@ #if str($track.data_format.track_config.canvas_options.impliedUTRs) != "false": <impliedUTRs>${track.data_format.track_config.canvas_options.impliedUTRs}</impliedUTRs> #end if + #else if $track.data_format.track_config.track_class == 'JBrowse/View/Track/HTMLFeatures': + #if str($track.data_format.track_config.html_options.transcriptType) != "": + <transcriptType>${track.data_format.track_config.html_options.transcriptType}</transcriptType> + #end if #end if #if $track.data_format.match_part.match_part_select: <match>${track.data_format.match_part.name}</match> @@ -420,7 +424,16 @@ help="Check this your input files does not contain UTR features, but the UTR can be 'implied' from the difference between the exon and CDS boundaries"/> </section> </when> - <when value="JBrowse/View/Track/HTMLFeatures" /> + <when value="JBrowse/View/Track/HTMLFeatures"> + <section name="html_options" title="HTMLFeatures Options [Advanced]" expanded="false"> + <param label="Transcript type" + name="transcriptType" + type="text" + value="" + help="If your input files represents transcripts, give the name of the corresponding features here (e.g. 'mRNA' or 'transcript')" + optional="True"/> + </section> + </when> </conditional> <expand macro="track_styling" /> <expand macro="color_selection" />