Mercurial > repos > iuc > jbrowse

diff test-data/menus/test.xml @ 17:ff11d442feed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jbrowse commit 908f16ea4eb082227437dc93e06e8cb742f5a257
author iuc
date Wed, 15 Nov 2017 15:15:27 -0500
parents ad4b9d7eae6a
children 1cfc579079a6
line wrap: on
line diff
--- a/test-data/menus/test.xml	Wed Sep 13 13:07:20 2017 -0400
+++ b/test-data/menus/test.xml	Wed Nov 15 15:15:27 2017 -0500
@@ -3,7 +3,27 @@
     <metadata>
         <gencode>11</gencode>
         <genomes>
-                  <genome>/tmp/tmplFZ5li/files/000/dataset_14.dat</genome>
+                  <genome path="/tmp/tmpnh6QWY/files/000/dataset_14.dat">
+                    <metadata>
+                      <dataset id="1ae74d26531588b0" hid="1"
+                          size="171.6 KB"
+                          edam_format="format_1929"
+                          file_ext="fasta" />
+                      <history id="8155e4b4bf1581ff"
+                          user_email="test@bx.psu.edu"
+                          user_id="2"
+                          display_name="test_history"/>
+                      <metadata
+                          dbkey="hg17"
+                          data_lines="2881"
+                          sequences="1"
+                          />
+                      <tool
+                          tool_id="upload1"
+                          tool_version="1.1.4"
+                          />
+                    </metadata>
+                  </genome>
         </genomes>
         <general>
             <defaultLocation></defaultLocation>
@@ -17,19 +37,47 @@
             <show_menu>true</show_menu>
             <hideGenomeOptions>false</hideGenomeOptions>
         </general>
+        <galaxyUrl>http://localhost:8080</galaxyUrl>
     </metadata>
     <tracks>
         <track cat="With menu or index" format="gene_calls" visibility="default_off">
             <files>
-              <trackFile path="/tmp/tmplFZ5li/files/000/dataset_15.dat" ext="gff3" label="1.gff" />
+              <trackFile path="/tmp/tmpnh6QWY/files/000/dataset_15.dat" ext="gff3" label="1.gff">
+                <metadata>
+                  <dataset id="440a6c2b5d9efe20" hid="2"
+                      size="2.3 KB"
+                      edam_format="format_1975"
+                      file_ext="gff3" />
+                  <history id="8155e4b4bf1581ff"
+                      user_email="test@bx.psu.edu"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="hg17"
+                      data_lines="27"
+                      comment_lines="19"
+                      columns="9"
+                      column_names=""
+                      delimiter="__tc__"
+                      attributes="6"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.4"
+                      />
+                </metadata>
+              </trackFile>
             </files>
 
             <options>
                 <style>
+                    <overridePlugins>False</overridePlugins>
+                    <overrideDraggable>False</overrideDraggable>
                     <className>feature</className>
                     <description>note,description</description>
-                    <label>name,id</label>
-                    <height>100px</height>
+                    <label>product,name,id</label>
+                    <height>10px</height>
+                    <maxHeight>600</maxHeight>
                 </style>
                 <scaling>
                         <method>ignore</method>
@@ -62,15 +110,42 @@
         </track>
         <track cat="With menu or index" format="gene_calls" visibility="default_off">
             <files>
-              <trackFile path="/tmp/tmplFZ5li/files/000/dataset_15.dat" ext="gff3" label="1.gff" />
+              <trackFile path="/tmp/tmpnh6QWY/files/000/dataset_15.dat" ext="gff3" label="1.gff">
+                <metadata>
+                  <dataset id="440a6c2b5d9efe20" hid="2"
+                      size="2.3 KB"
+                      edam_format="format_1975"
+                      file_ext="gff3" />
+                  <history id="8155e4b4bf1581ff"
+                      user_email="test@bx.psu.edu"
+                      user_id="2"
+                      display_name="test_history"/>
+                  <metadata
+                      dbkey="hg17"
+                      data_lines="27"
+                      comment_lines="19"
+                      columns="9"
+                      column_names=""
+                      delimiter="__tc__"
+                      attributes="6"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.4"
+                      />
+                </metadata>
+              </trackFile>
             </files>
 
             <options>
                 <style>
+                    <overridePlugins>False</overridePlugins>
+                    <overrideDraggable>False</overrideDraggable>
                     <className>feature</className>
                     <description>note,description</description>
-                    <label>name,id</label>
-                    <height>100px</height>
+                    <label>product,name,id</label>
+                    <height>10px</height>
+                    <maxHeight>600</maxHeight>
                 </style>
                 <scaling>
                         <method>ignore</method>
@@ -88,4 +163,10 @@
             </options>
         </track>
     </tracks>
+    <plugins
+        ComboTrackSelector=""
+        Bookmarks=""
+        GCContent=""
+        theme=""
+        />
 </root>