Mercurial > repos > iuc > jcvi_gff_stats

annotate test-data/summary.txt @ 0:2defe48e4c7a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
author iuc
date Thu, 02 Aug 2018 09:57:30 -0400
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0
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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1 ==================================================================
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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2 o all
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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3 ------------------------------------------------------------------
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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4 Max number of transcripts per gene 1
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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5 Mean exon size 151.1
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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6 Mean gene locus size (first to last exon) 3294.0
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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7 Mean number of distinct exons per gene 8.0
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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8 Mean number of transcripts per gene 1.0
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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9 Mean transcript size (UTR, CDS) 1208.5
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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10 Number of distinct exons 16
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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11 Number of genes 2
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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12 Number of genes with alternative transcript variants 0 (0.0%)
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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13 Number of multi-exon genes 2 (100.0%)
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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14 Number of predicted transcripts 2
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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15 Number of single-exon genes 0 (0.0%)
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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16 ------------------------------------------------------------------
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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17 =====================================================================================================
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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18 o % GC % of genome Average size (bp) Median size (bp) Number Total length (Mb)
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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19 -----------------------------------------------------------------------------------------------------
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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20 Exon 50% 20% 151 133 16 0Mb
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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21 Gene 43% 56% 3,294 3,294 2 0Mb
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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22 Intron 39% 35% 297 250 14 0Mb
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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23 -----------------------------------------------------------------------------------------------------
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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24 Exon_Length: Min=71 Max=410 N=15 Mean=153.2 SD=92.1160138087 Median=138.0 Sum=2298
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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25 Intron_Length: Min=83 Max=732 N=13 Mean=319.076923077 SD=211.891649212 Median=271.0 Sum=4148
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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26 Gene_Length: Min=579 Max=1719 N=2 Mean=1149.0 SD=570.0 Median=1149.0 Sum=2298
2defe48e4c7a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/jcvi_gff_stats commit f1e2c895bec4b8bf960d54f634c69fe18411846a
iuc
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27 Exon_Count: Min=6 Max=9 N=2 Mean=7.5 SD=1.5 Median=7.5 Sum=15