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changeset 2:552ef00aba90 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit fc0426e784d0eb5ca37484d2d0c088da289996dd
author iuc
date Tue, 22 Aug 2017 04:15:40 -0400
parents 7a9158bb6f98
children 2754990eb583
files test-data/kallisto_pseudo_out1.cells test-data/kallisto_pseudo_out1.ec test-data/kallisto_pseudo_out1.tab test-data/kallisto_pseudo_out2.ec test-data/kallisto_pseudo_out2.tab test-data/kallisto_pseudo_out3.ec test-data/kallisto_pseudo_out3.tab test-data/kallisto_pseudo_out4.ec test-data/kallisto_pseudo_out4.tab test-data/kallisto_pseudo_out5.bam test-data/kallisto_pseudo_out5.ec test-data/kallisto_pseudo_out5.tab test-data/kallisto_pseudo_out6.bam test-data/kallisto_pseudo_out6.cells test-data/kallisto_pseudo_out6.ec test-data/kallisto_pseudo_out6.tab test-data/mm10_chrM.umi test-data/sacCer2_chrM.umi test-data/sacCer2_chrM_R.fq.gz
diffstat 19 files changed, 316 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out1.cells	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,2 @@
+cell1
+cell1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out1.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out1.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,2 @@
+0	0	100
+0	1	100
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out2.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out2.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	100
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out3.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out3.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	100
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out4.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out4.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	200
Binary file test-data/kallisto_pseudo_out5.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out5.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out5.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	19
Binary file test-data/kallisto_pseudo_out6.bam has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out6.cells	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,2 @@
+cell1
+cell1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out6.ec	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,1 @@
+0	0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kallisto_pseudo_out6.tab	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,2 @@
+0	0	18
+0	1	18
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mm10_chrM.umi	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,100 @@
+CTAGATTTCC
+ATCAACAACC
+AACTAAATTT
+TTGTAATGCT
+TCCTCCAGCG
+CTCTAAGTGG
+CCAAAAAAAC
+TTGTCTTCAT
+ATAAGTGGGA
+TGACACATGA
+TTACTTCACC
+GATTTTGGGA
+CTAGGAGACC
+TCCCCAAGCA
+CTCAACTATA
+GCGGGGTTCT
+ACCTAAACAC
+ACCTTGTTCC
+CTACGAATAT
+TTACTTGCTT
+AGACTGTGAA
+TCTGACATAC
+ATTAGTTCAG
+AAAATAGTGA
+TGATCCAATA
+CAGGTTAAGA
+TATCGAAGAG
+AACCATTAAT
+ATTATAACTT
+GTAAATAAGA
+AAACAATTTC
+ATTGAAGGAA
+CCCACTACTT
+TCTGTTCTTA
+CCTGTACACT
+CAGAGCGTTC
+TGTTTGTGAT
+GCGTAATAGA
+ATATAATATT
+AAACACCCCA
+AAGTTTGAAT
+ACACATACAA
+GCAAACAAGA
+TTCTATATGT
+TGATAAATAT
+TAGTTGGTTT
+CTAAACTCAA
+GTTGGTAAAT
+ATAAGGCTAT
+AATCAGAAGT
+AATAACAGCC
+TTAGGTGGTT
+TTCAAAATTC
+AACATTAATA
+TAGTATGAGT
+ACACATCTGT
+ATTCCACTTA
+TTATTCTTTA
+CAACCAACAA
+ATAACCATTG
+TCAGGATGAG
+TGCCTTCCAG
+GGCGTAAAAC
+GTATGCTGTA
+TTTTGGATTA
+GATGTCTTGA
+CTTGAAACCA
+CCTATGTTCA
+TTTATTTAGA
+AAAATTATCA
+CTCATACATC
+AACAAACGAA
+ACAAATATTA
+AGTACATAAA
+GATTAGAATG
+ATAGCAACAC
+AGCTTAATAT
+AGGATAAGCA
+CTTTACTGGG
+TGCTCTGGCT
+GTAGTAGCCC
+TAATCTATAT
+TACTAGTAAA
+GTAATTGATT
+TCTCCCAAAC
+GGTCTTATCC
+ATAAATCAAG
+GTTTTGGTTC
+GATTAGGAAT
+TTATGGAGTT
+TTTGACTGAT
+AAACGAGGGT
+TCGCCCTCCC
+TTAGGCGATG
+TACTTATTAT
+GATTATAGTA
+CTAACATTAC
+TCACCCAAAA
+TTATTCCACT
+TAACATTGTT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sacCer2_chrM.umi	Tue Aug 22 04:15:40 2017 -0400
@@ -0,0 +1,198 @@
+TAGGCCGTTA
+CATCCAATGG
+ACCAATGGTT
+TGAAAACCAA
+TTATATGACT
+TTGTTGTTGT
+CTCCCCCATG
+GAAATGACTC
+CCAAACTATG
+GCAGATCGTT
+AGCCTCCCCT
+TTAACAGGCC
+TACAAACAGC
+TGTAGGCGAA
+AATGTTGTTC
+ACTGAAGCAT
+ATGACTTGTT
+TTTTCTCTTT
+ATTATTTTCG
+GGGTTCTGTG
+GTCACATATT
+TCCAATTCCT
+ATGGTTTGAA
+CAGCGTTACC
+AGTTTTTCGT
+CTGGACCTTC
+ATATTATTAG
+AGACCACCAA
+GAAAATGAAG
+AGTTTTGCTA
+TGCTCAAATT
+AATTCTTTCC
+TTCCCAGCTT
+CGATAACGGA
+CTATCCAGGC
+AGAGATCAAA
+AATTCTCAGG
+TGTCCTCTTG
+ATTAATATTC
+TCCAACCTGC
+TGTTTGTGAA
+ACGAGAATCT
+AGAACAGAAG
+AGTGATGTTC
+ATCAGCCCCA
+CTCGATGATC
+GTCTTCTTTA
+GTGGTGGTAA
+AGAAGAATCT
+AAGGAGGGGT
+CATTGATTAA
+ACCTGCAGAC
+GCATTCCGCT
+TAGTTTGAGA
+TTAATTTTCT
+TCCCTTATCT
+TGCTAGCAAG
+TCATGCGCTT
+TTCTCTCAAA
+ATGGATGTGT
+TAAAAGAAAT
+ATGTCCAGTG
+TATTGGTGAA
+TTGTAAGGAA
+GCACTCATCC
+GACTTGAAAT
+ACGAACGATA
+TTCGAACATT
+GACGTTGAAT
+AAACAGGACT
+ACCAAGAATT
+AAGGAAGCCC
+TGAATTTGAG
+AGTGCCTTAC
+AATAGCACGG
+GTGACATAGA
+TAACGAATTC
+GAGAAAAAGC
+TGCGTGGATT
+CAAACGTATT
+GCGAGGTTCT
+AGGGTGATTT
+CATGGATTAA
+GACAGGGTCT
+TCTTAAAGTC
+TAACCCGGCT
+GCGCTTTACA
+TATCGTAGTT
+AATGCTAGAA
+CTACAGGCGG
+AGTCATGAAT
+GGCAGGAGAA
+AATTTTAGAG
+GGTGGCGGCA
+TATGTTTATG
+GTGAGCCCTT
+GCACCAAGAG
+CAATCTACCG
+GCACAAGCGA
+ACAGCTCGAA
+TTTTCAGCAC
+TCAGCATCGT
+GGTGGAGGTG
+AGGAAAGTCG
+ACCTGCTTAT
+TCAACCAATT
+ATTAACTACT
+ATTTTGGCCA
+CGGTGAAGAT
+CTATGAATCA
+AAAGCCTTTG
+ATCATCGGTC
+TAATCCTTCA
+GATGATTTCT
+ATCCACTGTT
+ATCCATCACC
+GACTGTAAAG
+TTTTTTTCAC
+TACAAGACTA
+GAGAGCTACC
+ATGGGCGGAG
+GACATGAAGC
+ATGGTACCAC
+TTTGATTAGG
+TTTGACGGAA
+TACTAAGCAA
+AGTCGGCCAA
+ATCATTATTT
+CTTGGGCGAT
+GTTGACATTT
+ATTCAAATCA
+CCATAGGAGT
+AAGTTACCTC
+AAATATGTCA
+TTAAGGGATG
+TTTTTTTCAT
+ACTCTACACA
+ATGGGCCTTT
+CCCCTGTTGC
+TAAAAGAACG
+GTTCGCATTG
+AACATCATTG
+CCAAATTGAT
+TTCGTATTTT
+GTTGCTCAAT
+TTTTATACGT
+AGATTAAACC
+TCCCAATTTT
+TATTGGAATG
+AACGAGGTGA
+ATTCAGTTGC
+ACAAATTTTT
+CTGACGAGCT
+TGGTTGCTCT
+TTCTATTAAG
+AGAAAATATT
+AACCACGTCC
+ACATCAGAGC
+AACGTTCATG
+AATGCATGCG
+TTGTTAGGTA
+GCTAAATTCA
+AAACATGGTT
+TAAGACTGAA
+TGCACTTGGC
+ACGTCATCTG
+TAAGTCAGAA
+AGTGGAAGGA
+TCAAGTGTTG
+CTTACAAGGG
+TTCCACTCGC
+CATAAACATT
+CATGGTATAT
+GAAAAAGTAT
+AAGAAAGGTG
+CATAACACCT
+TAATGATAGG
+TCTCTTTTTC
+CCAAACTTTT
+GGTCGAGTAC
+GCCCTCGTTT
+ATTATAGGGT
+CAACAAAGAT
+AGTTGAGAAT
+ATCCTTGACT
+TCCTTAGGTT
+AGACTTAATC
+ATGAGAAGTC
+GCAATCTCCC
+GGACTACCTT
+TTGGGTAACG
+GAATATTTAC
+AGAGGCAGAT
+CTTTTGACCA
+GGGCAGCAAC
+ATTGGAGGGT
+ACGTTCTTGA
+GCACGTAACC
Binary file test-data/sacCer2_chrM_R.fq.gz has changed