Mercurial > repos > iuc > khmer_abundance_distribution_single

comparison abundance-dist-single.xml @ 7:55109291a355 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"
author iuc
date Wed, 18 Dec 2019 16:04:44 -0500
parents 20154a62bd11
children c018a72b523e
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6:09c6a051c5fd 7:55109291a355
1 <tool id="khmer_abundance_distribution_single" name="Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@.0"> 1 <tool id="khmer_abundance_distribution_single" name="khmer: Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@@TOOL_VERSION@">
2 <description> 2 <description>
3 Calculate abundance distribution of k-mers 3 Calculate abundance distribution of k-mers
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@BINARY@">abundance-dist-single.py</token> 6 <token name="@BINARY@">abundance-dist-single.py</token>
8 </macros> 8 </macros>
9 <expand macro="requirements" /> 9 <expand macro="requirements" />
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 <expand macro="version" /> 11 <expand macro="version" />
12 <command><![CDATA[ 12 <command><![CDATA[
13 set -xu && 13 set -u &&
14 mkdir output && cd output &&
15 @BINARY@ 14 @BINARY@
16 @TABLEPARAMS@ 15 @TABLEPARAMS@
17 ${zero} 16 ${zero}
18 ${bigcount} 17 ${bigcount}
19 #if $save_countgraph 18 #if $save_countgraph
26 25
27 ]]> 26 ]]>
28 </command> 27 </command>
29 <inputs> 28 <inputs>
30 <expand macro="input_sequence_filename" /> 29 <expand macro="input_sequence_filename" />
31 <param name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file" 30 <param argument="--savegraph" name="save_countgraph" type="boolean" label="Save the k-mer countgraph to a file"
32 help="(--savegraph)" /> 31 help="" />
33 <expand macro="input_zero" /> 32 <expand macro="input_zero" />
34 <expand macro="input_bigcount" /> 33 <expand macro="input_bigcount" />
35 <expand macro="tableinputs" /> 34 <expand macro="tableinputs" />
36 </inputs> 35 </inputs>
37 <outputs> 36 <outputs>
38 <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} k-mer countgraph"> 37 <data name="optional_output_countgraph" format="oxlicg" label="${tool.name} on ${on_string} k-mer countgraph">
39 <filter>save_countgraph == True</filter> 38 <filter>save_countgraph == True</filter>
40 </data> 39 </data>
41 <expand macro="abundance-histogram-output" /> 40 <expand macro="abundance-histogram-output" />
42 </outputs> 41 </outputs>
43 <tests> 42 <tests>