Mercurial > repos > iuc > khmer_abundance_distribution_single

changeset 8:c018a72b523e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 14ea2dc5ef36219c908ed64b256794711ce7b902"
author iuc
date Tue, 23 Mar 2021 21:29:55 +0000
parents 55109291a355
children 385a965c6f87
files abundance-dist-single.xml macros.xml test-data/test-abund-read-2.fq.gz
diffstat 3 files changed, 7 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/abundance-dist-single.xml	Wed Dec 18 16:04:44 2019 -0500
+++ b/abundance-dist-single.xml	Tue Mar 23 21:29:55 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="khmer_abundance_distribution_single" name="khmer: Abundance Distribution (all-in-one)" version="@WRAPPER_VERSION@@TOOL_VERSION@">
+<tool id="khmer_abundance_distribution_single" name="khmer: Abundance Distribution (all-in-one)" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>
         Calculate abundance distribution of k-mers
     </description>
@@ -55,7 +55,7 @@
             </output>
         </test>
         <test>
-            <param name="input_sequence_filename" value="test-abund-read-2.fa" />
+            <param name="input_sequence_filename" value="test-abund-read-2.fq.gz" />
             <param name="type" value="specific" />
             <param name="tablesize_specific" value="1e7" />
             <param name="n_tables" value="2" />
--- a/macros.xml	Wed Dec 18 16:04:44 2019 -0500
+++ b/macros.xml	Tue Mar 23 21:29:55 2021 +0000
@@ -1,9 +1,10 @@
 <macros>
-    <token name="@WRAPPER_VERSION@">3.0.0a3</token>
-    <token name="@TOOL_VERSION@">+galaxy1</token>
+    <token name="@TOOL_VERSION@">3.0.0a3</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">20.01</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@WRAPPER_VERSION@">khmer</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">khmer</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -75,7 +76,7 @@
             help="Put in order of precedence such as longest reads first." />
     </xml>
     <xml name="input_sequence_filename">
-        <param  name="input_sequence_filename" type="data" format="fasta,fastq"
+        <param  name="input_sequence_filename" type="data" format="fasta,fastq,fasta.gz,fastq.gz"
             label="Sequence in FASTA or FASTQ format" />
     </xml>
     <xml name="input_countgraph_filename">
Binary file test-data/test-abund-read-2.fq.gz has changed