Mercurial > repos > iuc > khmer_extract_partitions

comparison extract-partitions.xml @ 6:2c763fb18010 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit 7de685f4763d988a5a9abce4a9c2b4714daaf165"
author iuc
date Wed, 18 Dec 2019 16:00:12 -0500
parents d5a18dd63529
children 98b53d46e851
comparison
equal deleted inserted replaced
5:518ba4a77274 6:2c763fb18010
1 <tool id="khmer_extract_partitions" name="Extract partitions" version="@WRAPPER_VERSION@.0"> 1 <tool id="khmer_extract_partitions" name="khmer: Extract partitions" version="@WRAPPER_VERSION@@TOOL_VERSION@">
2 <description>Separate sequences that are annotated with partitions into grouped files</description> 2 <description>Separate sequences that are annotated with partitions into grouped files</description>
3 <macros> 3 <macros>
4 <token name="@BINARY@">extract-partitions.py</token> 4 <token name="@BINARY@">extract-partitions.py</token>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
20 #end for 20 #end for
21 ]]> 21 ]]>
22 </command> 22 </command>
23 <inputs> 23 <inputs>
24 <expand macro="input_sequences_filenames" /> 24 <expand macro="input_sequences_filenames" />
25 <param name="max_size" type="integer" label="Max group size" value="1000000" 25 <param argument="--max-size" name="max_size" type="integer" label="Max group size" value="1000000"
26 help="No more than this many number of sequences will be stored in each output (--max-size/-X)"/> 26 help="No more than this many number of sequences will be stored in each output"/>
27 <param name="min_partition_size" type="integer" label="Min partition size" value="5" 27 <param name="min_partition_size" type="integer" label="Min partition size" value="5"
28 help="The minimum partition size worth keeping (--min-partition-size/-m)" /> 28 help="The minimum partition size worth keeping (--min-partition-size/-m)" />
29 <param name="output_unassigned" type="boolean" checked="false" truevalue="--output-unassigned" falsevalue="" 29 <param name="output_unassigned" type="boolean" checked="false" truevalue="--output-unassigned" falsevalue=""
30 label="Output unassigned sequences" help="(--output-unassigned/-U)" /> 30 label="Output unassigned sequences" help="(--output-unassigned/-U)" />
31 </inputs> 31 </inputs>
32 <outputs> 32 <outputs>
33 <data name="distribution" format="txt" from_work_dir="output.dist" label="Partition size distribution from ${tool.name}" /> 33 <data name="distribution" format="txt" from_work_dir="output.dist" label="${tool.name} on ${on_string}: Partition size distribution" />
34 <collection name="groups-of-partitions" type="list"> 34 <collection name="groups-of-partitions" type="list">
35 <discover_datasets pattern="__name__" directory="output" /> 35 <discover_datasets pattern="__name__" directory="output" />
36 </collection> 36 </collection>
37 </outputs> 37 </outputs>
38 <tests> 38 <tests>