Mercurial > repos > iuc > khmer_filter_below_abundance_cutoff

diff filter-below-abund.xml @ 6:bf716cfc3225 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/khmer commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author iuc
date Fri, 07 Sep 2018 11:01:54 -0400
parents e0e33e40d7c4
children 569001af897d
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line diff
--- a/filter-below-abund.xml	Sat Jan 21 14:43:29 2017 -0500
+++ b/filter-below-abund.xml	Fri Sep 07 11:01:54 2018 -0400
@@ -10,12 +10,12 @@
     <expand macro="stdio" />
     <command><![CDATA[
         #for $num, $input in enumerate($inputs)
-            ln -s ${input} sequence-${num} &&
+            ln -s '${input}' sequence-${num} &&
         #end for
         mkdir output &&
         cd output &&
-        $__tool_directory__/@BINARY@
-        ${input_countgraph_filename}
+        python '$__tool_directory__/@BINARY@'
+        '${input_countgraph_filename}'
         #for $num, $input in enumerate($inputs)
            ../sequence-${num}
         #end for