Mercurial > repos > iuc > last

annotate test-data/last_train_E.txt @ 6:19c265784f35 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 88d7f81768f05f490f444b646f47241cf2547b44"
author iuc
date Sat, 27 Nov 2021 10:12:45 +0000
parents 8705e0d74a0f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
1 # lastal version: 1205
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
2 # maximum percent identity: 100
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
3 # scale of score parameters: 4.5512
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
4 # scale used while training: 91.024
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
5
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
6 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -r5 -q5 -a15 -b3 -A15 -B3 /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
8 # aligned letter pairs: 14901
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
9 # deletes: 694
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
10 # inserts: 834
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
11 # delOpens: 350
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
12 # insOpens: 402
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
13 # alignments: 1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
14 # mean delete size: 1.98286
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
15 # mean insert size: 2.07463
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
16 # matchProb: 0.951836
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
17 # delOpenProb: 0.0223571
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
18 # insOpenProb: 0.0256787
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
19 # delExtendProb: 0.495677
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
20 # insExtendProb: 0.517986
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
21
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
22 # substitution percent identity: 71.9408
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
23
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
24 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
25 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
26 # A 3291 532 387 390
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
27 # C 552 3221 180 685
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
28 # G 235 102 1561 84.7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
29 # T 335 554 146 2651
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
30
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
31 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
32 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
33 # A 0.220773 0.0356887 0.0259615 0.0261627
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
34 # C 0.0370303 0.216077 0.0120751 0.0459525
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
35 # G 0.0157647 0.00684256 0.104718 0.00568201
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
36 # T 0.0224731 0.0371645 0.00979425 0.177839
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
37
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
38 # delExistCost: 346
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
39 # insExistCost: 342
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
40 # delExtendCost: 62
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
41 # insExtendCost: 58
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
42
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
43 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
44 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
45 # A 76 -90 -59 -105
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
46 # C -87 73 -129 -54
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
47 # G -88 -164 145 -167
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
48 # T -112 -66 -127 90
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
49
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
50 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4322 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
51
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
52 # aligned letter pairs: 14771
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
53 # deletes: 379.3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
54 # inserts: 567.1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
55 # delOpens: 185.2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
56 # insOpens: 246.1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
57 # alignments: 2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
58 # mean delete size: 2.04806
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
59 # mean insert size: 2.30435
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
60 # matchProb: 0.971438
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
61 # delOpenProb: 0.01218
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
62 # insOpenProb: 0.0161851
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
63 # delExtendProb: 0.511732
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
64 # insExtendProb: 0.566038
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
65
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
66 # substitution percent identity: 70.0152
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
67
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
68 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
69 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
70 # A 3158 582.4 429.9 391.6
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
71 # C 589 3065 156.8 774
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
72 # G 252.2 88.64 1571 68.46
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
73 # T 342.6 630.1 131.09 2566
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
74
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
75 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
76 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
77 # A 0.213425 0.0393599 0.0290536 0.0264652
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
78 # C 0.0398059 0.20714 0.0105969 0.0523086
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
79 # G 0.0170442 0.00599049 0.106172 0.00462668
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
80 # T 0.0231537 0.0425836 0.00885935 0.173416
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
81
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
82 # delExistCost: 406
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
83 # insExistCost: 400
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
84 # delExtendCost: 60
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
85 # insExtendCost: 51
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
86
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
87 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
88 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
89 # A 76 -79 -48 -102
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
90 # C -78 72 -140 -41
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
91 # G -79 -174 146 -185
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
92 # T -107 -52 -136 89
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
93
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
94 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.6863 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
95
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
96 # aligned letter pairs: 14881
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
97 # deletes: 264.3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
98 # inserts: 451.9
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
99 # delOpens: 116.18
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
100 # insOpens: 171.3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
101 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
102 # mean delete size: 2.27492
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
103 # mean insert size: 2.63806
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
104 # matchProb: 0.980854
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
105 # delOpenProb: 0.00765779
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
106 # insOpenProb: 0.0112909
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
107 # delExtendProb: 0.560424
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
108 # insExtendProb: 0.620934
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
109
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
110 # substitution percent identity: 68.9602
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
111
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
112 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
113 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
114 # A 3126 617.2 445 406.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
115 # C 621.9 3041 159.4 804.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
116 # G 264.2 91.07 1560 68.32
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
117 # T 357.3 658.9 133.32 2554
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
118
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
119 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
120 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
121 # A 0.209677 0.0413989 0.0298485 0.0272728
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
122 # C 0.0417142 0.203976 0.0106918 0.0539554
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
123 # G 0.0177213 0.00610855 0.104638 0.00458259
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
124 # T 0.023966 0.0441959 0.00894248 0.17131
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
125
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
126 # delExistCost: 466
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
127 # insExistCost: 453
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
128 # delExtendCost: 52
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
129 # insExtendCost: 43
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
130
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
131 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
132 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
133 # A 75 -74 -44 -99
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
134 # C -73 71 -138 -37
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
135 # G -74 -171 147 -185
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
136 # T -103 -48 -134 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
137
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
138 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1379 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
139
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
140 # aligned letter pairs: 14981
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
141 # deletes: 217
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
142 # inserts: 405.1
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
143 # delOpens: 83.75
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
144 # insOpens: 134.12
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
145 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
146 # mean delete size: 2.59104
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
147 # mean insert size: 3.02043
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
148 # matchProb: 0.985471
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
149 # delOpenProb: 0.00550919
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
150 # insOpenProb: 0.0088226
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
151 # delExtendProb: 0.614055
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
152 # insExtendProb: 0.668921
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
153
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
154 # substitution percent identity: 68.4369
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
155
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
156 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
157 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
158 # A 3114 634.8 449.1 416.3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
159 # C 639 3019 163.9 815.3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
160 # G 269.6 93.35 1560 69.28
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
161 # T 364.7 670 135.51 2543
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
162
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
163 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
164 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
165 # A 0.208199 0.0424421 0.0300264 0.0278334
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
166 # C 0.0427229 0.201847 0.0109582 0.0545102
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
167 # G 0.0180252 0.00624129 0.1043 0.00463199
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
168 # T 0.0243835 0.0447956 0.00906007 0.170023
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
169
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
170 # delExistCost: 516
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
171 # insExistCost: 495
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
172 # delExtendCost: 44
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
173 # insExtendCost: 36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
174
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
175 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
176 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
177 # A 75 -71 -43 -97
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
178 # C -70 71 -135 -36
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
179 # G -72 -169 147 -183
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
180 # T -101 -46 -133 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
181
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
182 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.7798 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
183
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
184 # aligned letter pairs: 14981
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
185 # deletes: 204.2
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
186 # inserts: 393.3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
187 # delOpens: 71.01
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
188 # insOpens: 119.07
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
189 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
190 # mean delete size: 2.87565
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
191 # mean insert size: 3.3031
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
192 # matchProb: 0.987276
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
193 # delOpenProb: 0.00467969
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
194 # insOpenProb: 0.00784693
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
195 # delExtendProb: 0.652253
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
196 # insExtendProb: 0.697254
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
197
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
198 # substitution percent identity: 68.1926
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
199
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
200 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
201 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
202 # A 3104 642.4 451.1 421.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
203 # C 647.7 3009 167 819.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
204 # G 271.7 94.39 1560 70.33
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
205 # T 368.8 674.3 136.58 2543
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
206
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
207 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
208 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
209 # A 0.207194 0.0428807 0.0301113 0.0281288
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
210 # C 0.0432345 0.200853 0.0111474 0.0546956
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
211 # G 0.0181362 0.00630061 0.104131 0.00469458
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
212 # T 0.0246177 0.04501 0.00911682 0.169747
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
213
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
214 # delExistCost: 545
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
215 # insExistCost: 517
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
216 # delExtendCost: 39
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
217 # insExtendCost: 33
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
218
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
219 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
220 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
221 # A 74 -70 -43 -96
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
222 # C -69 70 -134 -35
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
223 # G -71 -168 146 -182
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
224 # T -100 -46 -132 88
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
225
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
226 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t90.3541 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
227
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
228 # aligned letter pairs: 14981
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
229 # deletes: 194.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
230 # inserts: 382.1
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
231 # delOpens: 63.11
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
232 # insOpens: 109.31
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
233 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
234 # mean delete size: 3.08034
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
235 # mean insert size: 3.49556
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
236 # matchProb: 0.988426
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
237 # delOpenProb: 0.00416391
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
238 # insOpenProb: 0.00721213
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
239 # delExtendProb: 0.67536
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
240 # insExtendProb: 0.713923
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
241
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
242 # substitution percent identity: 68.0193
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
243
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
244 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
245 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
246 # A 3093 646.9 451.1 424.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
247 # C 652.9 3008 168 821.5
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
248 # G 272.7 95.16 1550 70.95
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
249 # T 370.8 676.5 136.64 2532
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
250
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
251 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
252 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
253 # A 0.206603 0.0432109 0.0301321 0.028362
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
254 # C 0.0436117 0.200925 0.0112219 0.0548737
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
255 # G 0.0182155 0.00635639 0.103535 0.00473924
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
256 # T 0.0247683 0.0451881 0.00912713 0.16913
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
257
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
258 # delExistCost: 565
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
259 # insExistCost: 533
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
260 # delExtendCost: 36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
261 # insExtendCost: 30
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
262
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
263 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
264 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
265 # A 74 -69 -42 -95
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
266 # C -68 70 -133 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
267 # G -70 -167 147 -181
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
268 # T -99 -45 -131 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
269
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
270 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1953 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
271
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
272 # aligned letter pairs: 14981
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
273 # deletes: 195.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
274 # inserts: 384.5
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
275 # delOpens: 60.75
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
276 # insOpens: 106.8
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
277 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
278 # mean delete size: 3.21975
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
279 # mean insert size: 3.60019
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
280 # matchProb: 0.988744
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
281 # delOpenProb: 0.00400949
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
282 # insOpenProb: 0.00704878
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
283 # delExtendProb: 0.689417
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
284 # insExtendProb: 0.722237
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
285
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
286 # substitution percent identity: 67.9748
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
287
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
288 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
289 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
290 # A 3093 648.9 451.2 425.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
291 # C 655.1 3008 169 821.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
292 # G 272.8 95.36 1550 71.16
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
293 # T 372.8 677.6 136.64 2532
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
294
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
295 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
296 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
297 # A 0.206468 0.0433161 0.030119 0.0284102
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
298 # C 0.04373 0.200794 0.0112813 0.0548311
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
299 # G 0.0182103 0.00636558 0.103467 0.00475016
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
300 # T 0.0248856 0.045232 0.00912115 0.169019
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
301
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
302 # delExistCost: 575
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
303 # insExistCost: 539
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
304 # delExtendCost: 34
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
305 # insExtendCost: 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
306
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
307 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
308 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
309 # A 74 -69 -42 -94
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
310 # C -68 70 -133 -35
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
311 # G -70 -167 147 -181
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
312 # T -99 -45 -131 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
313
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
314 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1816 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
315
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
316 # aligned letter pairs: 14981
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
317 # deletes: 196.9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
318 # inserts: 385.7
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
319 # delOpens: 59.46
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
320 # insOpens: 105.67
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
321 # alignments: 2
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
322 # mean delete size: 3.31147
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
323 # mean insert size: 3.65004
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
324 # matchProb: 0.988902
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
325 # delOpenProb: 0.00392498
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
326 # insOpenProb: 0.00697532
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
327 # delExtendProb: 0.698019
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
328 # insExtendProb: 0.726031
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
329
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
330 # substitution percent identity: 67.9622
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
331
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
332 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
333 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
334 # A 3093 648.8 451.2 426.6
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
335 # C 655 3008 168.9 821.4
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
336 # G 273.8 95.45 1550 71.26
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
337 # T 372.7 678.6 136.62 2532
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
338
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
339 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
340 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
341 # A 0.206429 0.0433015 0.0301135 0.0284716
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
342 # C 0.0437152 0.200756 0.0112725 0.0548209
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
343 # G 0.0182736 0.00637041 0.103448 0.00475595
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
344 # T 0.0248743 0.0452903 0.00911813 0.168988
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
345
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
346 # delExistCost: 580
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
347 # insExistCost: 541
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
348 # delExtendCost: 33
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
349 # insExtendCost: 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
350
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
351 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
352 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
353 # A 74 -69 -42 -94
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
354 # C -68 70 -133 -35
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
355 # G -70 -167 147 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
356 # T -99 -45 -131 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
357
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
358 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.131 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
359
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
360 # aligned letter pairs: 14981
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
361 # deletes: 197
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
362 # inserts: 385.7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
363 # delOpens: 58.72
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
364 # insOpens: 105.14
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
365 # alignments: 2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
366 # mean delete size: 3.3549
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
367 # mean insert size: 3.66844
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
368 # matchProb: 0.988985
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
369 # delOpenProb: 0.00387646
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
370 # insOpenProb: 0.00694091
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
371 # delExtendProb: 0.701929
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
372 # insExtendProb: 0.727405
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
373
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
374 # substitution percent identity: 67.9358
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
375
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
376 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
377 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
378 # A 3093 648.8 451.2 426.6
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
379 # C 656 2998 168.9 821.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
380 # G 273.8 95.45 1550 71.36
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
381 # T 372.7 678.6 136.62 2532
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
382
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
383 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
384 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
385 # A 0.206552 0.0433272 0.0301314 0.0284886
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
386 # C 0.043808 0.200208 0.0112792 0.0548535
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
387 # G 0.0182845 0.0063742 0.10351 0.00476546
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
388 # T 0.0248891 0.0453173 0.00912355 0.169088
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
389
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
390 # delExistCost: 584
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
391 # insExistCost: 542
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
392 # delExtendCost: 32
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
393 # insExtendCost: 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
394
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
395 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
396 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
397 # A 74 -69 -42 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
398 # C -68 70 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
399 # G -70 -166 146 -180
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
400 # T -99 -45 -131 88
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
401
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
402 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t90.8423 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
403
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
404 # aligned letter pairs: 14981
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
405 # deletes: 197
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
406 # inserts: 384.7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
407 # delOpens: 57.97
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
408 # insOpens: 104.51
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
409 # alignments: 2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
410 # mean delete size: 3.39831
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
411 # mean insert size: 3.68099
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
412 # matchProb: 0.989075
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
413 # delOpenProb: 0.00382729
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
414 # insOpenProb: 0.00689995
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
415 # delExtendProb: 0.705736
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
416 # insExtendProb: 0.728334
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
417
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
418 # substitution percent identity: 67.9254
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
419
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
420 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
421 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
422 # A 3093 648.8 451.2 427.6
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
423 # C 656 2998 169.9 821.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
424 # G 273.8 95.75 1550 71.36
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
425 # T 372.7 678.6 136.62 2532
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
426
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
427 # probability matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
428 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
429 # A 0.20652 0.0433205 0.0301267 0.028551
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
430 # C 0.0438013 0.200177 0.0113443 0.0548451
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
431 # G 0.0182817 0.00639325 0.103494 0.00476473
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
432 # T 0.0248853 0.0453103 0.00912215 0.169062
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
433
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
434 # delExistCost: 586
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
435 # insExistCost: 543
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
436 # delExtendCost: 32
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
437 # insExtendCost: 29
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
438
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
439 # score matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
440 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
441 # A 74 -69 -43 -94
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
442 # C -68 70 -132 -35
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
443 # G -70 -166 146 -180
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
444 # T -99 -45 -132 88
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
445
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
446 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t90.682 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
447
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
448 # aligned letter pairs: 14981
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
449 # deletes: 194.8
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
450 # inserts: 383.5
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
451 # delOpens: 57.43
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
452 # insOpens: 103.95
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
453 # alignments: 2
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
454 # mean delete size: 3.39196
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
455 # mean insert size: 3.68927
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
456 # matchProb: 0.989147
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
457 # delOpenProb: 0.00379192
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
458 # insOpenProb: 0.00686348
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
459 # delExtendProb: 0.705185
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
460 # insExtendProb: 0.728944
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
461
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
462 # substitution percent identity: 67.9249
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
463
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
464 # count matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
465 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
466 # A 3093 649.9 451.1 427.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
467 # C 656 2998 169.9 821.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
468 # G 273.8 95.75 1550 71.46
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
469 # T 372.7 678.6 135.62 2532
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
470
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
471 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
472 # A C G T
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
473 # A 0.206519 0.0433937 0.0301199 0.0285508
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
474 # C 0.043801 0.200176 0.0113442 0.0548447
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
475 # G 0.0182816 0.00639321 0.103493 0.00477137
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
476 # T 0.0248851 0.04531 0.00905532 0.169061
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
477
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
478 # delExistCost: 587
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
479 # insExistCost: 543
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
480 # delExtendCost: 32
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
481 # insExtendCost: 29
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
482
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
483 # score matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
484 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
485 # A 74 -68 -42 -94
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
486 # C -68 70 -132 -35
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
487 # G -70 -166 147 -180
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
488 # T -99 -45 -132 88
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
489
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
490 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.2049 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
491
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
492 # aligned letter pairs: 14981
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
493 # deletes: 195.9
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
494 # inserts: 384.7
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
495 # delOpens: 57.66
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
496 # insOpens: 104.5
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
497 # alignments: 2
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
498 # mean delete size: 3.3975
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
499 # mean insert size: 3.68134
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
500 # matchProb: 0.989096
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
501 # delOpenProb: 0.00380691
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
502 # insOpenProb: 0.00689944
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
503 # delExtendProb: 0.705666
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
504 # insExtendProb: 0.72836
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
505
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
506 # substitution percent identity: 67.9195
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
507
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
508 # count matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
509 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
510 # A 3093 649.9 451.2 427.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
511 # C 656.1 2998 169.9 821.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
512 # G 273.8 95.74 1550 71.46
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
513 # T 373.7 678.6 135.62 2532
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
514
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
515 # probability matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
516 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
517 # A 0.206503 0.0433902 0.0301241 0.0285485
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
518 # C 0.0438042 0.20016 0.0113433 0.0548404
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
519 # G 0.0182801 0.00639203 0.103485 0.00477099
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
520 # T 0.0249499 0.0453064 0.0090546 0.169048
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
521
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
522 # delExistCost: 586
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
523 # insExistCost: 543
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
524 # delExtendCost: 32
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
525 # insExtendCost: 29
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
526
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
527 # score matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
528 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
529 # A 74 -68 -42 -94
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
530 # C -68 70 -132 -35
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
531 # G -70 -166 147 -180
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
532 # T -99 -45 -132 88
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
533
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
534 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.2167 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
535
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
536 # aligned letter pairs: 14981
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
537 # deletes: 196
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
538 # inserts: 384.7
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
539 # delOpens: 57.87
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
540 # insOpens: 104.51
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
541 # alignments: 2
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
542 # mean delete size: 3.3869
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
543 # mean insert size: 3.68099
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
544 # matchProb: 0.989081
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
545 # delOpenProb: 0.00382071
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
546 # insOpenProb: 0.0069
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
547 # delExtendProb: 0.704745
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
548 # insExtendProb: 0.728334
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
549
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
550 # substitution percent identity: 67.9245
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
551
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
552 # count matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
553 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
554 # A 3093 649.9 451.2 427.6
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
555 # C 656.1 2998 169.9 821.4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
556 # G 273.8 95.64 1550 71.46
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
557 # T 372.7 678.6 135.62 2532
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
558
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
559 # probability matrix (query letters = columns, reference letters = rows):
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
560 # A C G T
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
561 # A 0.206518 0.0433934 0.0301264 0.0285506
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
562 # C 0.0438074 0.200175 0.0113441 0.0548444
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
563 # G 0.0182815 0.00638583 0.103493 0.00477134
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
564 # T 0.024885 0.0453097 0.00905527 0.16906
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
565
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
566 # delExistCost: 586
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
567 # insExistCost: 543
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
568 # delExtendCost: 32
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
569 # insExtendCost: 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
570
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
571 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
572 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
573 # A 74 -69 -42 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
574 # C -68 70 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
575 # G -70 -166 147 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
576 # T -99 -45 -132 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
577
4
8705e0d74a0f "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
iuc
parents: 3
diff changeset
578 # lastal -j7 -D1000000 -E10 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.0834 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpw04gddt3
3
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
579
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
580 # aligned letter pairs: 14981
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
581 # deletes: 196
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
582 # inserts: 384.7
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
583 # delOpens: 57.87
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
584 # insOpens: 104.51
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
585 # alignments: 2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
586 # mean delete size: 3.3869
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
587 # mean insert size: 3.68099
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
588 # matchProb: 0.989081
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
589 # delOpenProb: 0.00382071
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
590 # insOpenProb: 0.0069
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
591 # delExtendProb: 0.704745
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
592 # insExtendProb: 0.728334
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
593
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
594 # substitution percent identity: 67.93
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
595
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
596 # count matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
597 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
598 # A 3093 648.8 451.2 427.6
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
599 # C 656 2998 169.9 821.4
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
600 # G 273.8 95.75 1550 71.36
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
601 # T 372.7 678.6 135.61 2532
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
602
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
603 # probability matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
604 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
605 # A 0.206534 0.0433235 0.0301288 0.0285529
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
606 # C 0.0438042 0.200191 0.011345 0.0548488
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
607 # G 0.0182829 0.00639368 0.103501 0.00476505
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
608 # T 0.024887 0.0453133 0.00905532 0.169074
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
609
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
610 # delExistCost: 586
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
611 # insExistCost: 543
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
612 # delExtendCost: 32
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
613 # insExtendCost: 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
614
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
615 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
616 # A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
617 # A 74 -69 -42 -94
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
618 # C -68 70 -132 -35
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
619 # G -70 -166 147 -180
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
620 # T -99 -45 -132 88
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
621
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
622 #last -X 0
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
623 #last -Q 0
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
624 #last -t4.80115
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
625 #last -a 29
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
626 #last -A 28
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
627 #last -b 2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
628 #last -B 1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
629 #last -s 1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
630 #last -S 1
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
631 # score matrix (query letters = columns, reference letters = rows):
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
632 A C G T
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
633 A 4 -3 -2 -5
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
634 C -3 4 -7 -2
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
635 G -3 -8 7 -9
3de2195f32c0 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 72dc050116d14e7a1342e7f9a2f7e095033d9a3a"
iuc
parents:
diff changeset
636 T -5 -2 -7 4