Mercurial > repos > iuc > last
diff test-data/last_train.txt @ 4:8705e0d74a0f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/last commit 6b601baaf89634bc8d110ea06e3e64c7a585f3ba"
| author | iuc |
|---|---|
| date | Wed, 24 Mar 2021 22:36:50 +0000 |
| parents | 3de2195f32c0 |
| children |
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--- a/test-data/last_train.txt Fri Nov 13 09:05:49 2020 +0000 +++ b/test-data/last_train.txt Wed Mar 24 22:36:50 2021 +0000 @@ -1,43 +1,43 @@ -# lastal version: 1021 +# lastal version: 1205 # maximum percent identity: 100 # scale of score parameters: 4.5512 # scale used while training: 91.024 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -r5 -q5 -a15 -b3 -A15 -B3 /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -r5 -q5 -a15 -b3 -A15 -B3 /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14938.3 -# deletes: 664.27 -# inserts: 839.49 -# delOpens: 344.82 -# insOpens: 404.93 +# aligned letter pairs: 14938.4 +# deletes: 664.28 +# inserts: 839.52 +# delOpens: 344.93 +# insOpens: 404.94 # alignments: 3 -# mean delete size: 1.92643 -# mean insert size: 2.07317 -# matchProb: 0.951966 -# delOpenProb: 0.0219742 -# insOpenProb: 0.0258048 -# delExtendProb: 0.480904 -# insExtendProb: 0.517648 +# mean delete size: 1.92584 +# mean insert size: 2.0732 +# matchProb: 0.951959 +# delOpenProb: 0.0219809 +# insOpenProb: 0.0258051 +# delExtendProb: 0.480746 +# insExtendProb: 0.517653 -# substitution percent identity: 71.9318 +# substitution percent identity: 71.9301 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3296.3 533.237 387.81 392.24 -# C 553.59 3241.5 182.39 686.22 -# G 232.54 102.399 1565.4 84.91 -# T 335.173 558.68 147.16 2651 +# A 3296.3 533.242 387.82 392.35 +# C 553.59 3241.5 182.39 686.23 +# G 232.64 102.401 1565.4 84.91 +# T 335.174 558.781 147.17 2651 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.22048 0.0356667 0.0259395 0.0262358 -# C 0.0370281 0.216815 0.0121996 0.0458993 -# G 0.0155539 0.00684918 0.104705 0.00567939 -# T 0.0224188 0.0373685 0.00984312 0.177318 +# A 0.220475 0.0356662 0.0259396 0.0262426 +# C 0.0370272 0.21681 0.0121993 0.0458989 +# G 0.0155603 0.00684915 0.104703 0.00567926 +# T 0.0224183 0.0373744 0.00984356 0.177314 -# delExistCost: 343 +# delExistCost: 342 # insExistCost: 341 -# delExtendCost: 64 +# delExtendCost: 65 # insExtendCost: 58 # score matrix (query letters = columns, reference letters = rows): @@ -47,84 +47,84 @@ # G -89 -164 145 -167 # T -112 -66 -127 90 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3148 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1872 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14338.3 -# deletes: 327.44 -# inserts: 474.13 -# delOpens: 166.73 -# insOpens: 216.45 +# aligned letter pairs: 14397.9 +# deletes: 322.93 +# inserts: 481.67 +# delOpens: 166.26 +# insOpens: 218.88 # alignments: 10 -# mean delete size: 1.96389 -# mean insert size: 2.19048 -# matchProb: 0.973244 -# delOpenProb: 0.0113172 -# insOpenProb: 0.014692 -# delExtendProb: 0.490807 -# insExtendProb: 0.54348 +# mean delete size: 1.94232 +# mean insert size: 2.20061 +# matchProb: 0.973223 +# delOpenProb: 0.0112383 +# insOpenProb: 0.0147951 +# delExtendProb: 0.485152 +# insExtendProb: 0.545581 -# substitution percent identity: 70.6019 +# substitution percent identity: 70.5263 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3076.4 546.106 412.41 369.93 -# C 561.42 2983.2 149.401 735.35 -# G 245.82 80.868 1562.07 66.655 -# T 326.724 603.44 120.838 2510.5 +# A 3087.2 550.976 415.27 370.69 +# C 567.6 2996 150.293 740.47 +# G 246.31 81.558 1563.06 66.884 +# T 329.603 608.12 121.409 2521.4 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.214366 0.0380532 0.0287371 0.0257771 -# C 0.0391203 0.207872 0.0104104 0.0512399 -# G 0.017129 0.00563496 0.108846 0.00464458 -# T 0.0227664 0.0420483 0.0084201 0.174934 +# A 0.214138 0.0382175 0.0288045 0.0257123 +# C 0.0393706 0.207812 0.0104248 0.0513615 +# G 0.0170849 0.00565713 0.108419 0.0046393 +# T 0.0228624 0.0421812 0.00842133 0.174893 -# delExistCost: 405 -# insExistCost: 402 -# delExtendCost: 64 +# delExistCost: 404 +# insExistCost: 401 +# delExtendCost: 65 # insExtendCost: 54 # score matrix (query letters = columns, reference letters = rows): # A C G T -# A 77 -81 -49 -104 -# C -79 73 -142 -42 -# G -80 -181 146 -186 -# T -108 -52 -142 90 +# A 76 -81 -49 -104 +# C -78 73 -142 -42 +# G -79 -180 146 -186 +# T -108 -52 -141 89 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4973 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t90.4093 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14657.7 -# deletes: 218.21 -# inserts: 385.36 -# delOpens: 102.2 -# insOpens: 152.161 +# aligned letter pairs: 14586.1 +# deletes: 207.97 +# inserts: 370.61 +# delOpens: 97.51 +# insOpens: 146.118 # alignments: 10 -# mean delete size: 2.13513 -# mean insert size: 2.53258 -# matchProb: 0.982218 -# delOpenProb: 0.00684846 -# insOpenProb: 0.0101964 -# delExtendProb: 0.531644 -# insExtendProb: 0.605146 +# mean delete size: 2.13281 +# mean insert size: 2.53637 +# matchProb: 0.982843 +# delOpenProb: 0.00657043 +# insOpenProb: 0.00984574 +# delExtendProb: 0.531134 +# insExtendProb: 0.605736 -# substitution percent identity: 69.4007 +# substitution percent identity: 69.4001 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3091.6 591.394 434.35 391.72 -# C 605.8 2996.8 154.6091 779.75 -# G 260.46 83.802 1568.22 67.9713 -# T 351.852 646.07 124.676 2532.5 +# A 3071.2 586.39 432.58 390.03 +# C 602.06 2979.4 154.2015 775.84 +# G 260.13 83.439 1563.17 67.5164 +# T 349.003 643.71 124.293 2522.3 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.210577 0.0402814 0.0295847 0.0266811 -# C 0.0412626 0.20412 0.0105308 0.0531108 -# G 0.0177406 0.00570797 0.106816 0.0046297 -# T 0.0239655 0.0440055 0.008492 0.172495 +# A 0.21028 0.0401492 0.0296181 0.0267048 +# C 0.0412221 0.203995 0.0105579 0.0531206 +# G 0.0178107 0.00571294 0.107028 0.00462274 +# T 0.0238957 0.0440738 0.00851015 0.172698 -# delExistCost: 466 -# insExistCost: 457 +# delExistCost: 469 +# insExistCost: 460 # delExtendCost: 57 # insExtendCost: 45 @@ -132,175 +132,175 @@ # A C G T # A 76 -75 -45 -100 # C -73 72 -140 -38 -# G -75 -178 147 -185 +# G -74 -178 147 -185 # T -103 -48 -140 89 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5154 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4064 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14615.5 -# deletes: 176.132 -# inserts: 337.667 -# delOpens: 73.361 -# insOpens: 117.993 +# aligned letter pairs: 14614.3 +# deletes: 173.005 +# inserts: 333.783 +# delOpens: 71.881 +# insOpens: 116.037 # alignments: 8 -# mean delete size: 2.40089 -# mean insert size: 2.86175 -# matchProb: 0.986477 -# delOpenProb: 0.00495152 -# insOpenProb: 0.00796397 -# delExtendProb: 0.583489 -# insExtendProb: 0.650564 +# mean delete size: 2.40683 +# mean insert size: 2.87652 +# matchProb: 0.986705 +# delOpenProb: 0.00485315 +# insOpenProb: 0.0078344 +# delExtendProb: 0.584515 +# insExtendProb: 0.652358 -# substitution percent identity: 68.8798 +# substitution percent identity: 68.8464 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3057.2 603.516 434.56 399.47 -# C 620.42 2962.4 159.336 789.74 -# G 264.31 86.899 1557.17 68.449 -# T 353.847 650 125.897 2508.2 +# A 3054 603.416 435.41 400.71 +# C 620.59 2961.2 159.53 789.72 +# G 265.6 86.864 1557.13 68.4163 +# T 354.125 649.76 125.994 2505.1 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.208805 0.0412198 0.0296802 0.0272836 -# C 0.0423743 0.20233 0.0108826 0.0539388 -# G 0.0180522 0.00593515 0.106354 0.00467503 -# T 0.0241675 0.0443946 0.00859869 0.171309 +# A 0.208641 0.0412238 0.0297461 0.0273755 +# C 0.0423971 0.202301 0.0108987 0.0539516 +# G 0.0181451 0.00593432 0.106379 0.00467402 +# T 0.0241929 0.0443899 0.00860758 0.171142 -# delExistCost: 514 -# insExistCost: 497 +# delExistCost: 516 +# insExistCost: 500 # delExtendCost: 49 -# insExtendCost: 39 +# insExtendCost: 38 # score matrix (query letters = columns, reference letters = rows): # A C G T # A 75 -72 -44 -98 -# C -71 72 -137 -37 -# G -73 -174 146 -184 +# C -70 72 -136 -37 +# G -72 -174 146 -184 # T -102 -46 -138 89 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.0742 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.2552 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14806.2 -# deletes: 167.925 -# inserts: 326.866 -# delOpens: 62.871 -# insOpens: 105.559 +# aligned letter pairs: 14846.5 +# deletes: 168.42 +# inserts: 340.671 +# delOpens: 63.085 +# insOpens: 107.237 # alignments: 7 -# mean delete size: 2.67095 -# mean insert size: 3.09652 -# matchProb: 0.988224 -# delOpenProb: 0.00419626 -# insOpenProb: 0.00704543 -# delExtendProb: 0.625601 -# insExtendProb: 0.677057 +# mean delete size: 2.66973 +# mean insert size: 3.1768 +# matchProb: 0.988132 +# delOpenProb: 0.00419872 +# insOpenProb: 0.00713732 +# delExtendProb: 0.62543 +# insExtendProb: 0.685218 -# substitution percent identity: 68.3956 +# substitution percent identity: 68.3619 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3074.6 626.457 444.21 418.05 -# C 637.55 2977.3 164.69 809.88 -# G 269.41 92.415 1559.3 69.29 -# T 359.136 664.2 129.482 2527.2 +# A 3085.6 630.559 444.71 420.06 +# C 641.49 2985.3 165.39 812.21 +# G 270.72 92.7 1563.4 69.63 +# T 360.446 667.21 130.014 2532.3 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.207419 0.042262 0.0299673 0.0282025 -# C 0.0430104 0.200854 0.0111103 0.0546361 -# G 0.0181749 0.0062345 0.105193 0.00467444 -# T 0.024228 0.0448082 0.00873511 0.17049 +# A 0.207481 0.0423998 0.029903 0.0282455 +# C 0.0431348 0.200736 0.0111211 0.0546143 +# G 0.0182037 0.0062333 0.105126 0.00468203 +# T 0.024237 0.0448643 0.00874235 0.170276 # delExistCost: 546 -# insExistCost: 519 +# insExistCost: 521 # delExtendCost: 42 -# insExtendCost: 35 +# insExtendCost: 34 # score matrix (query letters = columns, reference letters = rows): # A C G T -# A 75 -70 -43 -95 +# A 75 -70 -44 -95 # C -69 71 -134 -36 # G -71 -169 146 -183 # T -101 -45 -136 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.1177 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.0533 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14896.9 -# deletes: 177.451 -# inserts: 344.879 -# delOpens: 59.29 -# insOpens: 103.311 +# aligned letter pairs: 14896.8 +# deletes: 179.049 +# inserts: 347.285 +# delOpens: 59.728 +# insOpens: 103.021 # alignments: 5 -# mean delete size: 2.99293 -# mean insert size: 3.33826 -# matchProb: 0.988809 -# delOpenProb: 0.00393548 -# insOpenProb: 0.00685746 -# delExtendProb: 0.66588 -# insExtendProb: 0.700443 +# mean delete size: 2.99774 +# mean insert size: 3.37101 +# matchProb: 0.988799 +# delOpenProb: 0.00396454 +# insOpenProb: 0.00683818 +# delExtendProb: 0.666415 +# insExtendProb: 0.703353 -# substitution percent identity: 68.1858 +# substitution percent identity: 68.1898 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3084.6 635.337 445.51 422.24 -# C 649.18 2997.2 169.11 816.24 -# G 273.53 93.848 1562.4 71.64 -# T 365.354 674.15 132.032 2532.3 +# A 3083.6 634.137 445.41 422.54 +# C 648.98 2997.2 169.11 816.24 +# G 273.63 93.839 1562.4 71.58 +# T 365.254 674.05 132.042 2532.3 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.206678 0.0425696 0.0298506 0.0282914 -# C 0.0434971 0.200822 0.0113309 0.0546907 -# G 0.0183274 0.00628811 0.104686 0.00480011 -# T 0.0244799 0.0451702 0.00884656 0.169672 +# A 0.206644 0.0424959 0.0298486 0.028316 +# C 0.0434906 0.200854 0.0113327 0.0546993 +# G 0.018337 0.0062885 0.104702 0.00479684 +# T 0.024477 0.0451706 0.00884863 0.169699 -# delExistCost: 567 -# insExistCost: 531 +# delExistCost: 566 +# insExistCost: 532 # delExtendCost: 37 # insExtendCost: 32 # score matrix (query letters = columns, reference letters = rows): # A C G T # A 75 -70 -43 -95 -# C -68 71 -132 -35 +# C -68 71 -132 -36 # G -70 -168 146 -181 # T -100 -45 -135 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5512 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3763 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco -# aligned letter pairs: 14897.4 -# deletes: 183.45 -# inserts: 350.682 -# delOpens: 57.728 -# insOpens: 101.786 +# aligned letter pairs: 14897.3 +# deletes: 182.446 +# inserts: 350.271 +# delOpens: 57.786 +# insOpens: 101.442 # alignments: 5 -# mean delete size: 3.17783 -# mean insert size: 3.44529 -# matchProb: 0.989012 -# delOpenProb: 0.00383246 -# insOpenProb: 0.00675739 -# delExtendProb: 0.68532 -# insExtendProb: 0.709748 +# mean delete size: 3.15727 +# mean insert size: 3.45292 +# matchProb: 0.989031 +# delOpenProb: 0.00383641 +# insOpenProb: 0.00673473 +# delExtendProb: 0.683271 +# insExtendProb: 0.71039 -# substitution percent identity: 68.1676 +# substitution percent identity: 68.1657 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3083.6 635.04 445.71 423.87 -# C 650.27 2996.2 169.49 816.21 -# G 272.96 94.054 1562.4 71.81 -# T 365.777 674.06 132.018 2532.4 +# A 3083.6 635.136 445.71 423.86 +# C 650.36 2996.2 169.48 816.19 +# G 272.95 94.064 1561.4 71.9 +# T 365.571 674.06 131.918 2532.4 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.206594 0.0425463 0.0298616 0.0283983 -# C 0.0435666 0.200739 0.0113555 0.0546843 -# G 0.0182877 0.00630141 0.104677 0.00481111 -# T 0.0245062 0.0451605 0.00884491 0.169665 +# A 0.206609 0.0425557 0.0298637 0.0283997 +# C 0.0435758 0.200753 0.0113556 0.0546868 +# G 0.0182884 0.00630253 0.104618 0.00481749 +# T 0.0244942 0.0451638 0.00883885 0.169677 -# delExistCost: 578 -# insExistCost: 536 +# delExistCost: 577 +# insExistCost: 537 # delExtendCost: 34 # insExtendCost: 31 @@ -311,40 +311,40 @@ # G -71 -168 146 -180 # T -100 -45 -135 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3765 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.3676 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco # aligned letter pairs: 14897.3 -# deletes: 186.949 -# inserts: 354.265 -# delOpens: 56.756 -# insOpens: 101.214 +# deletes: 186.95 +# inserts: 354.262 +# delOpens: 56.767 +# insOpens: 100.893 # alignments: 5 -# mean delete size: 3.29391 -# mean insert size: 3.50016 -# matchProb: 0.989113 -# delOpenProb: 0.00376834 -# insOpenProb: 0.00672015 -# delExtendProb: 0.696409 -# insExtendProb: 0.714299 +# mean delete size: 3.29329 +# mean insert size: 3.51126 +# matchProb: 0.989133 +# delOpenProb: 0.00376915 +# insOpenProb: 0.00669898 +# delExtendProb: 0.696352 +# insExtendProb: 0.715202 -# substitution percent identity: 68.1476 +# substitution percent identity: 68.1477 # count matrix (query letters = columns, reference letters = rows): # A C G T # A 3081.6 633.831 445.71 424.07 -# C 650.26 2986.2 169.38 816.09 +# C 650.26 2986.2 169.38 816.08 # G 272.84 94.051 1561.4 71.9 -# T 365.569 674.07 131.791 2532.4 +# T 365.569 674.17 131.691 2532.4 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.206664 0.0425072 0.029891 0.0284398 -# C 0.0436089 0.200266 0.0113593 0.0547301 -# G 0.0182977 0.00630742 0.104714 0.00482189 -# T 0.0245165 0.0452057 0.00883841 0.169833 +# A 0.206664 0.0425072 0.0298911 0.0284398 +# C 0.043609 0.200266 0.0113593 0.0547295 +# G 0.0182977 0.00630743 0.104714 0.00482189 +# T 0.0245165 0.0452125 0.00883171 0.169833 -# delExistCost: 584 -# insExistCost: 539 +# delExistCost: 583 +# insExistCost: 540 # delExtendCost: 33 # insExtendCost: 30 @@ -355,39 +355,39 @@ # G -71 -168 146 -180 # T -100 -45 -135 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.5205 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.511 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco # aligned letter pairs: 14897.4 -# deletes: 188.951 -# inserts: 357.176 -# delOpens: 56.362 -# insOpens: 100.973 +# deletes: 188.952 +# inserts: 357.073 +# delOpens: 56.483 +# insOpens: 100.742 # alignments: 5 -# mean delete size: 3.35245 -# mean insert size: 3.53734 -# matchProb: 0.989155 -# delOpenProb: 0.00374231 -# insOpenProb: 0.00670439 -# delExtendProb: 0.701711 -# insExtendProb: 0.717302 +# mean delete size: 3.34529 +# mean insert size: 3.54443 +# matchProb: 0.989162 +# delOpenProb: 0.00375038 +# insOpenProb: 0.0066891 +# delExtendProb: 0.701072 +# insExtendProb: 0.717867 -# substitution percent identity: 68.1403 +# substitution percent identity: 68.1444 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3081.6 634.732 445.81 423.98 +# A 3081.6 633.732 445.81 423.98 # C 650.18 2986.2 169.39 816.1 # G 273.05 94.134 1561.4 71.9 -# T 365.574 674.07 131.782 2531.4 +# T 365.574 674.17 131.782 2531.4 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.206662 0.0425672 0.0298975 0.0284335 -# C 0.0436032 0.200264 0.0113598 0.0547303 -# G 0.0183116 0.00631293 0.104713 0.00482185 -# T 0.0245166 0.0452053 0.00883773 0.169764 +# A 0.206675 0.0425027 0.0298993 0.0284352 +# C 0.0436058 0.200276 0.0113605 0.0547336 +# G 0.0183127 0.00631331 0.104719 0.00482214 +# T 0.0245181 0.0452147 0.00883826 0.169774 -# delExistCost: 587 +# delExistCost: 586 # insExistCost: 541 # delExtendCost: 32 # insExtendCost: 30 @@ -399,37 +399,37 @@ # G -71 -168 146 -180 # T -100 -45 -135 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4821 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.494 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco # aligned letter pairs: 14897.4 -# deletes: 189.355 -# inserts: 357.265 -# delOpens: 56.08 -# insOpens: 100.658 +# deletes: 190.558 +# inserts: 358.367 +# delOpens: 56.231 +# insOpens: 100.769 # alignments: 5 -# mean delete size: 3.37652 -# mean insert size: 3.5493 -# matchProb: 0.989194 -# delOpenProb: 0.00372374 -# insOpenProb: 0.00668374 -# delExtendProb: 0.703837 -# insExtendProb: 0.718254 +# mean delete size: 3.38884 +# mean insert size: 3.55632 +# matchProb: 0.989177 +# delOpenProb: 0.0037337 +# insOpenProb: 0.00669099 +# delExtendProb: 0.704914 +# insExtendProb: 0.718811 -# substitution percent identity: 68.1453 +# substitution percent identity: 68.1458 # count matrix (query letters = columns, reference letters = rows): # A C G T -# A 3081.6 633.731 445.81 423.98 +# A 3081.6 633.732 445.81 423.98 # C 650.08 2986.2 169.39 816.1 -# G 273.05 94.136 1561.4 71.9 -# T 365.674 674.07 131.672 2531.4 +# G 273.05 94.125 1561.4 71.9 +# T 365.574 674.07 131.672 2531.4 # probability matrix (query letters = columns, reference letters = rows): # A C G T -# A 0.206677 0.0425032 0.0298997 0.0284356 -# C 0.0435997 0.200279 0.0113607 0.0547344 -# G 0.018313 0.00631353 0.10472 0.0048222 -# T 0.0245251 0.0452087 0.00883101 0.169776 +# A 0.206679 0.0425036 0.0298999 0.0284358 +# C 0.0436 0.200281 0.0113608 0.0547348 +# G 0.0183131 0.00631284 0.104721 0.00482224 +# T 0.0245186 0.045209 0.00883107 0.169778 # delExistCost: 588 # insExistCost: 541 @@ -443,7 +443,7 @@ # G -71 -168 146 -180 # T -100 -45 -135 88 -# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4704 -p- /home/rdallet/galaxy/tools/last/test-data/humdb /tmp/tmpow095T/tmp/tmpmqx0kk84 +# lastal -j7 -D1000000 -s1 -S1 -T0 -m10 -k1 -P1 -X0 -Q0 -t91.4704 -p- /home/berntm/.planemo/planemo_tmp_y1t9frxe/test-data/humdb /tmp/tmpc7ashbco # aligned letter pairs: 14897.4 # deletes: 188.951