Mercurial > repos > iuc > links

view test-data/scaffolding.assembly_correspondence.tsv @ 0:7acd9ade2dd1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
author iuc
date Wed, 23 Feb 2022 08:25:55 +0000
parents
children
line wrap: on
line source

#This correspondence links_output.assembly_correspondence.tsv file lists the scaffold ID and contig ID used by LINKS (reported in the .scaffolds file), with the original contig name in the provided assembly file (-f sequences.fasta.gz)
LINKS_scaffold_ID	LINKS_contig_ID	original_name	orientation(f=forward/r=reverse)	number_of_links	links_ratio	gap_or_overlap(-)
scaffold1	1	658 358719 3056919 148-,...,484+	f	9	0	-55
scaffold1	2	669 48119 389147 223-,...,554-	r	NA	NA	NA
scaffold2	3	688 226353 2008589 541+,567+,217-	f	NA	NA	NA