Mercurial > repos > iuc > macs2

annotate macs2_macros.xml @ 18:640d3af5d833 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
author iuc
date Sat, 02 Apr 2022 21:37:38 +0000
parents acbd3fb47f90
children 86e2413cf3f8
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
1 <macros>
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
2 <token name="@TOOL_VERSION@">2.2.7.1</token>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
3 <token name="@VERSION_SUFFIX@">0</token>
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
4 <xml name="requirements">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
5 <requirements>
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
6 <requirement type="package" version="@TOOL_VERSION@">macs2</requirement>
8
e8a060164e11 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 4e2bb09986aebf442f2981e8d77aa512d4c86b90
iuc
parents: 5
diff changeset
7 <requirement type="package" version="3.4">r-base</requirement>
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
8 <yield />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
9 </requirements>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
10 </xml>
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
11 <xml name="bio_tools">
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
12 <xrefs>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
13 <xref type="bio.tools">macs</xref>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
14 </xrefs>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
15 </xml>
9
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
16 <token name="@home_dir@"><![CDATA[
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
17 export PYTHON_EGG_CACHE=`pwd` &&
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
18 ]]></token>
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
19
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
20 <xml name="conditional_effective_genome_size">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
21 <conditional name="effective_genome_size_options">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
22 <param name="effective_genome_size_options_selector" type="select" label="Effective genome size"
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
23 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of Ns that should be discarded.
9
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
24 Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. Sizes are from the MACS2 website (--gsize)">
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
25 <option value="2700000000">H. sapiens (2.7e9)</option>
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
26 <option value="1870000000">M. musculus (1.87e9)</option>
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
27 <option value="120000000">D. melanogaster (1.2e8)</option>
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
28 <option value="90000000">C. elegans (9e7)</option>
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
29 <option value="user_defined">User defined</option>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
30 </param>
9
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
31 <when value="2700000000" />
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
32 <when value="1870000000" />
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
33 <when value="120000000" />
acbd3fb47f90 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
iuc
parents: 8
diff changeset
34 <when value="90000000" />
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
35 <when value="user_defined">
2
bfe57d6e0c4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 63955994af5090ec444c03c221df0012d5ae4e74
iuc
parents: 0
diff changeset
36 <param name="gsize" type="integer" label="Effective genome size" value=""/>
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
37 </when>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
38 </conditional>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
39 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
40
fe62ba547975 Uploaded
iuc
parents:
diff changeset
41 <xml name="keep_duplicates">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
42 <conditional name="keep_dup_options">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
43 <param name="keep_dup_options_selector" type="select" label="How many duplicate tags at the exact same location are allowed?"
fe62ba547975 Uploaded
iuc
parents:
diff changeset
44 help="The default 'auto' option calculates the maximum tags at the exact same location based on binomial distribution using 1e-5 as pvalue cutoff. The 'all' option keeps every tags. If an integer is given, at most this number of tags will be kept at the same location. The default is to keep one tag at the same location. (--keep-dup 1)">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
45 <option value="1" selected="true">1</option>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
46 <option value="all">all</option>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
47 <option value="auto">auto</option>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
48 <option value="user">user defined</option>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
49 </param>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
50 <when value="user">
2
bfe57d6e0c4c planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 63955994af5090ec444c03c221df0012d5ae4e74
iuc
parents: 0
diff changeset
51 <param name="user_keepdup" type="integer" value="1" label="Keep at most this number of tags at the exact same location"
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
52 help=""/>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
53 </when>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
54 <when value="1" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
55 <when value="all" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
56 <when value="auto" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
57 </conditional>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
58 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
59
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
60 <xml name="mfold_options">
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
61 <section name="mfold" title="Mfold settings" expanded="True"
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
62 help="Select the regions within MFOLD range of highconfidence enrichment ratio against background to build model. Fold-enrichment in regions must be lower than upper limit, and higher than the lower limit. Default is 5 for lower and 50 for upper" >
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
63 <param name="lower" type="integer" value="5" label="Set lower mfold bound" />
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
64 <param name="upper" type="integer" value="50" label="Set upper mfold bound" />
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
65 </section>
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
66 </xml>
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
67
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
68 <token name="@mfold_command@">
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
69 --mfold '${mfold.lower}' '${mfold.upper}'
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
70 </token>
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
71
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
72 <token name="@effective_genome_size@">
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
73 #if $effective_genome_size_options.effective_genome_size_options_selector == "user_defined":
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
74 --gsize '${ effective_genome_size_options.gsize }'
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
75 #else:
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
76 --gsize '${ effective_genome_size_options.effective_genome_size_options_selector }'
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
77 #end if
fe62ba547975 Uploaded
iuc
parents:
diff changeset
78 </token>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
79
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
80 <xml name="buffer_size">
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
81 <param argument="--buffer-size" type="integer" min="0" value="100000" label="Buffer size"
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
82 help="Buffer size for incrementally increasing internal array size to store reads alignment information. In most cases, you don't have to change this parameter.
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
83 However, if there are large number of chromosomes/contigs/scaffolds in your alignment, it's recommended to specify a smaller buffer size in order to
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
84 decrease memory usage (but it will take longer time to read alignment files)." />
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
85 </xml>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
86
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
87 <token name="@buffer_size@">
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
88 --buffer-size $buffer_size
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
89 </token>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
90
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
91 <xml name="version_command">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
92 <version_command>macs2 --version</version_command>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
93 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
94
fe62ba547975 Uploaded
iuc
parents:
diff changeset
95 <xml name="tag_size">
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
96 <param argument="--tsize" type="integer" label="Tag size" value="" optional="true"
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
97 help="This will override the auto detected tag size. Per default that option is deactivated: -1.0 " />
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
98 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
99 <xml name="band_width">
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
100 <param name="band_width" type="integer" value="300"
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
101 label="Band width for picking regions to compute fragment size"
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
102 help=" You can set this parameter as the medium fragment size expected from sonication or size selection. (--bw)" />
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
103 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
104
18
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
105 <xml name="fragment_size">
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
106 <param argument="--d-min" type="integer" value="20"
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
107 label="Minimum fragment size in basepair"
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
108 help="Any predicted fragment size less than this will be excluded."/>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
109 </xml>
640d3af5d833 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
iuc
parents: 9
diff changeset
110
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
111 <token name="@tag_size@">
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
112 #if $tsize:
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
113 --tsize '${ tsize }'
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
114 #end if
fe62ba547975 Uploaded
iuc
parents:
diff changeset
115 </token>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
116
fe62ba547975 Uploaded
iuc
parents:
diff changeset
117 <xml name="stdio">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
118 <stdio>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
119 <exit_code range="1:" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
120 <exit_code range=":-1" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
121 <regex match="Error:" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
122 <regex match="Exception:" />
fe62ba547975 Uploaded
iuc
parents:
diff changeset
123 </stdio>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
124 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
125
fe62ba547975 Uploaded
iuc
parents:
diff changeset
126 <token name="@citation@">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
127 ------
fe62ba547975 Uploaded
iuc
parents:
diff changeset
128
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
129 Integration of MACS2 with Galaxy performed by Ziru Zhou and Bjoern Gruening.
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
130
fe62ba547975 Uploaded
iuc
parents:
diff changeset
131 </token>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
132 <xml name="citations">
fe62ba547975 Uploaded
iuc
parents:
diff changeset
133 <citations>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
134 <citation type="doi">10.1186/gb-2008-9-9-r137</citation>
5
beb902da6e5f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e10f301c7f8c54a7d12df4e631527197baccf70b
iuc
parents: 3
diff changeset
135 <citation type="doi">10.1038/nprot.2012.101</citation>
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
136 </citations>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
137 </xml>
fe62ba547975 Uploaded
iuc
parents:
diff changeset
138 </macros>