Mercurial > repos > iuc > macs2
comparison macs2_bdgdiff.xml @ 9:acbd3fb47f90 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author | iuc |
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date | Thu, 25 Jan 2018 02:11:52 -0500 |
parents | beb902da6e5f |
children | 38769345062e |
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8:e8a060164e11 | 9:acbd3fb47f90 |
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6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
7 <requirement type="package" version="4.1.3">gawk</requirement> | 7 <requirement type="package" version="4.1.3">gawk</requirement> |
8 </expand> | 8 </expand> |
9 <expand macro="stdio" /> | 9 <expand macro="stdio" /> |
10 <expand macro="version_command" /> | 10 <expand macro="version_command" /> |
11 <command> | 11 <command><![CDATA[ |
12 <![CDATA[ | 12 @home_dir@ |
13 macs2 bdgdiff | 13 macs2 bdgdiff |
14 --t1 '${ t1 }' | 14 --t1 '${ t1 }' |
15 --t2 '${ t2 }' | 15 --t2 '${ t2 }' |
16 --c1 '${ c1 }' | 16 --c1 '${ c1 }' |
17 --c2 '${ c2 }' | 17 --c2 '${ c2 }' |
23 -o c1.bed c2.bed both.bed && | 23 -o c1.bed c2.bed both.bed && |
24 | 24 |
25 awk '!/^track name/' "c1.bed" > '${ output_cond1 }' && | 25 awk '!/^track name/' "c1.bed" > '${ output_cond1 }' && |
26 awk '!/^track name/' "c2.bed" > '${ output_cond1 }' && | 26 awk '!/^track name/' "c2.bed" > '${ output_cond1 }' && |
27 awk '!/^track name/' "both.bed" > '${ output_both }' | 27 awk '!/^track name/' "both.bed" > '${ output_both }' |
28 | 28 ]]></command> |
29 ]]> | |
30 </command> | |
31 <inputs> | 29 <inputs> |
32 <param name="t1" type="data" format="bedgraph" label="BedGraph for Treatment experiment 1" /> | 30 <param name="t1" type="data" format="bedgraph" label="BedGraph for Treatment experiment 1" /> |
33 <param name="t2" type="data" format="bedgraph" label="BedGraph for Treatment experiment 2" /> | 31 <param name="t2" type="data" format="bedgraph" label="BedGraph for Treatment experiment 2" /> |
34 | 32 |
35 <param name="c1" type="data" format="bedgraph" label="BedGraph for Control experiment 1" /> | 33 <param name="c1" type="data" format="bedgraph" label="BedGraph for Control experiment 1" /> |