Mercurial > repos > iuc > mageck_pathway

annotate mageck_macros.xml @ 6:39a996d44e16 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
author iuc
date Wed, 01 Apr 2020 06:13:05 -0400
parents 9744e1124d0f
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c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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1 <?xml version="1.0"?>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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2 <macros>
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39a996d44e16 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
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4 <token name="@VERSION@">0.5.9.2</token>
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ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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6 <xml name="requirements">
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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7 <requirements>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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8 <requirement type="package" version="@VERSION@">mageck</requirement>
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39a996d44e16 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
iuc
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9 <requirement type="package" version="3.0.3">r-gplots</requirement>
39a996d44e16 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
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10 <requirement type="package" version="1.8_4">r-xtable</requirement>
39a996d44e16 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e9c464070ad7c01b830345a550477e8dfdcac5ae"
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11 <requirement type="package" version="3.3.0">r-ggplot2</requirement>
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c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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12 <yield/>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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13 </requirements>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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14 </xml>
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c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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16 <xml name="version">
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17 <version_command><![CDATA[
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18 echo $(mageck -v )", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", xtable version" $(R --vanilla --slave -e "library(xtable); cat(sessionInfo()\$otherPkgs\$xtable\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
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ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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19 ]]></version_command>
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c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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20 </xml>
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ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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22 <xml name="sort_criteria">
ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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23 <param name="sort_criteria" argument="--sort-criteria" type="select" optional="true" label="Sorting criteria">
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24 <option value="neg" selected="True">Negative selection</option>
ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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25 <option value="pos">positive selection</option>
ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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26 </param>
ff3716b505d3 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
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27 </xml>
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28
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29 <xml name="citations">
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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30 <citations>
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31 <citation type="doi">10.1186/s13059-014-0554-4</citation>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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32 </citations>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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33 </xml>
c871e57e2abb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
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34 </macros>