annotate mageck_macros.xml @ 5:688a8eccea71 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
author iuc
date Sat, 05 Jan 2019 05:49:38 -0500
parents 38073c236d71
children 9b4f4533c9ee
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
2 <macros>
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
3
5
688a8eccea71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
iuc
parents: 4
diff changeset
4 <token name="@VERSION@">0.5.8</token>
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
5
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
6 <xml name="requirements">
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
7 <requirements>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
8 <requirement type="package" version="@VERSION@">mageck</requirement>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
9 <requirement type="package" version="3.0.1">r-gplots</requirement>
5
688a8eccea71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 0c76d2d8677e66d4f76ac748614c7911f298758c
iuc
parents: 4
diff changeset
10 <requirement type="package" version="1.8_3">r-xtable</requirement>
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
11 <yield/>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
12 </requirements>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
13 </xml>
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
14
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
15 <xml name="version">
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
16 <version_command><![CDATA[
4
38073c236d71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 4478aabdcb10e4787450b1b23944defa7dc38ffe
iuc
parents: 2
diff changeset
17 echo $(mageck -v )", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", xtable version" $(R --vanilla --slave -e "library(xtable); cat(sessionInfo()\$otherPkgs\$xtable\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
18 ]]></version_command>
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
19 </xml>
2
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
20
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
21 <xml name="sort_criteria">
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
22 <param name="sort_criteria" argument="--sort-criteria" type="select" optional="true" label="Sorting criteria">
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
23 <option value="neg" selected="True">Negative selection</option>
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
24 <option value="pos">positive selection</option>
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
25 </param>
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
26 </xml>
81bbbddcf285 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
iuc
parents: 0
diff changeset
27
0
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
28 <xml name="citations">
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
29 <citations>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
30 <citation type="doi">10.1186/s13059-014-0554-4</citation>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
31 </citations>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
32 </xml>
b8da4d41aa1d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 71cef018eec5ee7ff7f3853599c027e80e2637fe
iuc
parents:
diff changeset
33 </macros>