Mercurial > repos > iuc > malt_run

annotate tool-data/malt_indices.loc.sample @ 0:d505990b8c89 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
author iuc
date Fri, 12 Nov 2021 18:39:23 +0000
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d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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1 # This is a sample file distributed with Galaxy that enables tools
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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2 # to use a directory of MALT indexed data files. The malt_index.loc
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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3 # file has this format (longer white space characters are TAB characters):
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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4 #
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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5 # <unique_build_id> <dbkey> <display_name> <file_path>
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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6 #
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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7 # So, for example, if you have the phiX indexe stored in
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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8 # /depot/data2/galaxy/phiX/base/,
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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9 # then the malt_index.loc entry would look like this:
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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10 #
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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11 # phiX phiX phiX Pretty /depot/data2/galaxy/phiX/base/phiX.fa
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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12 #
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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13 # and your /depot/data2/galaxy/phiX/base/ directory
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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14 # would contain phiX.fa.* files:
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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15 #
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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16 #-rw-r--r-- 1 galaxy universe 830134 2005-09-13 10:12 phiX.fa
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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17 #...etc...
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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18
d505990b8c89 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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19 #phiX phiX Coliphage phiX /phiX