Mercurial > repos > iuc > medaka_consensus

annotate test-data/plasmid.fasta @ 0:1c4402b9244d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
author iuc
date Sun, 23 Feb 2020 09:04:41 -0500
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1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
1 >4 length=3792 depth=114.52x circular=true
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
2 TTGCGGTGTCTGCGTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATTACAGCATTATGTTAAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
3 TTTTATAATTGTCTTTAGTCATTGCGCTATGATTTTGTAGGTGGAGTTGTTTCATATTTTTGATATAAAT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
4 TCTTTTATCTCACTGAAGCAGTCATCGTCAGTATCAATGGTTTTGTTCTTCATTGATATGCCTATTCTAG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
5 AATCTGATTCCTTATTACAACTAAGGTAAACTTGAACTTTTGCTTTCTTTTCATTATTTGGGTAAGCGTA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
6 ATCAGGATCTAAGGATGTAATAATAGATTCTTGTTCTTTTATTTTATTGAATAGATCGTCTATATATCTA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
7 AACACCTCTTTCTTACACGCGTGAGCAATGATTAGATCTTCTATTGCGCCATTCTTGTTTTTTCCTGGCA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
8 TGATAAAGAAAGATATTTTTGTGCTTCCGTTAATGGCTATTTCATTATGCGAGCTTGGTGATGAAATGTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
9 AAGCTCATTTAATGTTGAAATTATCGATCTTTCCGTGTCAGAAAACGATTCGTCGGCATCGATGATTAAG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
10 AATATACTTTCTTTTTCATTAAAAGACTCTATGCTTTTAAATGCTCTAAGGGTTTGTTTTAGTTTTGTCT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
11 TTCCATTTATTTTTTCAACATAAACATCATTAATTCCTTCTATTTCAAGTAGATTGCAAAGGAAGTGAAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
12 ATCATCATCACCCTCAACGAAAATGACTTTTTTATAATCATTTATTTTTCTCGGTTTCATTTATCTCACC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
13 TCCCAGCCATTTTCAACTGAAAAAGAAAAATCATCCATGTTAAATTGCATTGCTGTAGGTTTTTGAGATT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
14 CCTTGTCTCTTCCCAGTCTTATGTAAGATATATCTTTTCTTTTTTCATCTAATTCGTTTATCGCACATAT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
15 TACATCATGGCTGTGTGTTGTTGTAAATATTTGATTATTATTGGTTTTTGCTGCTTCTATCAAAGCGTTG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
16 ATCATATCTTTGATTACTGAGTAATGAATTCCATTTTCTATCTCATCAATGAGAATAATTGAGTCTTTTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
17 GAACTAAGATTGAGCTAATGAAAGACAGCGCTCTGCTTACTCCTTCACCAAGCATTGATATTTCATTTAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
18 TTCACTTAGTCCTATATCTAAAAAAATCTCTTTGTTTTGATCTGTTGCTATTATTGCAATATCGTTAATT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
19 CTATTATCTATTCTTTTTAGGTTGCCTATTATTTCATCTTTTCTTTTTTGTGTTAGTAGTTTTGATACGT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
20 TTTTTATCGTTGCTTCTTTGTTTATGTTTCTTGATGTGGTTATTATCGCTGCGGTTTTGAATTCATATAG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
21 CTTACCTTTTTTAGTTTGTTTTATTTCTCCGTTTATTTCTTGTGCTTTTTGTGTTATTTTTATAGTAATC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
22 AATTCTTCTGGGGGGGTTCTTTTTCCGTTCTGTGTTTCACTAACCTTAATCATTAAAACATTCCCCTTTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
23 CCTGAGAGCCGAGGGTTTGTCGCAATGGAGGGGTGTTTGATAATATTGACTCAACATTGAGGGACACGCT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
24 TGATTCACTTTGTGTGTTATCTATCGTTGAGTATTTTTGTGTTACTTCTGACCTTTCATCTCTTATTGTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
25 ATGGACATTTCTTTGGATGTGTCCATGTTATAAAAATAGCTATCCCAAAATGAGTTTTCTTTATTTAAAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
26 GAGATGCTTCATTTCTAAAGCTTTTTACTTTTAACAGAGCTGCTGGGTTTTTTACGTCATAAAATGAAAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
27 TATCGCGTCTAATATCGATGTTTTCCCAAAGTTGTTTTTTCCGGATATTACATTAAGTGTTTTTAGTTGT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
28 TTGAGAGTTATGCTCTCGAAACACTTAAAATTTTTTAAGTGGATATCTTTTATCATGTTTAAACTTGCTC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
29 TCCATTTCTGTTTACGTTTACATAGTAATAATGTGTTTATTTATGCATCACTATGCCACTGTTTCTTTTC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
30 TAGAAGTATAATCAAAATAATATTACTTTATAGTCCTGTTTGGATTGATTTTAACCAGTTTGTCGGAGTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
31 TCTTCTTGTGATTATTGTGTTCTGGTCGTAATCTCCTAAACTGAAAACGAAAAAACCACCTGGGGAGGTG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
32 GTTTGATCGAAGGTTAAGTCAGTTGGGGAACTGCTTAACCAGGTAACTGTCTTGTGCGAGACGAGTCACC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
33 AAAACTGTCCTTTCAGTGTAGCTGTAGTCAGGCCATCACTTCAAGTACTCTCTTGAACCTCTCGCACATC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
34 GACTTTTACCAATGGCTGCTGCCAGTGGCGCTTTGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
35 ACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
36 TACACCGAACCGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
37 ACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACACCTG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
38 GTATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGGCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
39 GGGCGGAGCCTATGGAAAAACGCCTGCGGCGCTGGCTTCCTCCGGTGCTTTGCTTTTTGCTCACATGTTC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
40 TTTCCGACTTTATCCCCCGATTCTGTGGATAACCGTATTACCGCTTTTGAGTGAGCTGACACCGCTCGCC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
41 GCAGTCGAACGACCGAGCGTAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCTTATGTGACATTTTCT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
42 CCTTACGCTCTGTTGTGCCGTTCGGCATCCTGTCCTGAGCGTTATCTCTCTGTGCTATTTTCTACTTCAA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
43 AGCGTGTCTGGATGCTGTTCTGGAGTTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGCAGCCTGTTC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
44 GTCAGCATCGGGTGCGTCCAGTTTTTCGAGCAGCGTCAGGCTCTGACTTTTTATGAATCCCGCCATGTTG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
45 AGTACGGCTTGCTGCTGCTTGTTCATCTTTTCGTTTTCTCCGTTCTGTCTGTCATCTGCGTTGTGTGATT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
46 ATATCGCGTACCACTTTTCGACTGTTTTGCTGCCGTTATTCTGCCGCTTGGCTTTTTGACGGGCATTTCT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
47 GTCAGACAACACTGTCACTGCCAAAAAACTGCCGTGCCTTTGTCGGTAATTCGAGCTTGCTGACAGGACA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
48 GGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTGCCCTGGTCAGGGCTTTGCCCCGA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
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diff changeset
49 CACCCATGTCAGATACGGAGCCATGTTTTATGACAAAACGAAGTGGAAGTAATACGCGCAGGCGGGCTAT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
50 CAGTCGCCCTGTTCGTCTGACGGCAGAAGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
51 ACCGTTTCCGGTTTTTTACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGATCGGGTAC
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
52 TGAAAGAAGTTATGAGACTGGGGGCGTTACAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGACAG
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
53 GGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAGACTTATGGCAGAT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
54 TAGCTTCCCGGAGAGAAAACTGTCGAAAACAGACGGTATGAACACCGTAAGCTCCCAAAGTGATCACCAT
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
55 TCGCTTTCATGCATAGCTATGCAGCGAGCTGAAAACGATCCTGACGCATCCTTCCTGTTTTCCCGGGGTA
1c4402b9244d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 28167363fc58681984e067445dd9c6a25fd33a6c"
iuc
parents:
diff changeset
56 AAACATCTCTTT